K. Mulani, Harish Kumar, M. Gaurav, S. Sumam David
{"title":"Hardware Acceleration of Optically Labeled Human Genome Sequencing using a Novel Algorithm","authors":"K. Mulani, Harish Kumar, M. Gaurav, S. Sumam David","doi":"10.1109/CONECCT.2018.8482395","DOIUrl":null,"url":null,"abstract":"Recently, reconstruction of the entire DNA sequence from optically labeled genomes has been explored. In this paper, we present details of a novel algorithm for this genome assembly. We elucidate the design methodology and results for a multi-core CPU (1.98x speedup) and FPGA (7.022x speedup) implementation to accelerate the computations.","PeriodicalId":430389,"journal":{"name":"2018 IEEE International Conference on Electronics, Computing and Communication Technologies (CONECCT)","volume":"72 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2018-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2018 IEEE International Conference on Electronics, Computing and Communication Technologies (CONECCT)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/CONECCT.2018.8482395","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Recently, reconstruction of the entire DNA sequence from optically labeled genomes has been explored. In this paper, we present details of a novel algorithm for this genome assembly. We elucidate the design methodology and results for a multi-core CPU (1.98x speedup) and FPGA (7.022x speedup) implementation to accelerate the computations.
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