Burhan Ma’arif, Reyhan Rahma Samudra, F. A. Muslikh, Tanaya Jati Dhrama Dewi, Luthfi Ahmad Muchlasi
{"title":"Antineuroinflammatory Properties of Compounds from Ethyl Acetate Fraction of Marsilea crenata C. Presl. Against Toll-Like Receptor 2 (3A7B) In Silico","authors":"Burhan Ma’arif, Reyhan Rahma Samudra, F. A. Muslikh, Tanaya Jati Dhrama Dewi, Luthfi Ahmad Muchlasi","doi":"10.18860/planar.v2i0.1831","DOIUrl":null,"url":null,"abstract":"Parkinson's disease (PD) can be triggered by overactive TLR2 due to α-synuclein abnormalities and aggregation. Marsilea crenata C. Presl. leaves inhibit neuroinflammatory progression. This study aimed to predict the antineuroinflammatory activity of M. crenata leaves with TLR2 (ID 3A7B) in an in silico study. The list of chemicals was collected through metabolite profiling with UPLC-QToF MS/MS, then analyzed for physicochemical properties using SwissADME and toxicity using the ProTox II online program. This analysis confirmed the molecule's safety for therapeutic use. ChemDraw 12.0 was used to build metabolite-profiled compounds. Avogadro 1.2.0 was utilized to optimize geometry, while PyRx 0.8 was used for Autodock Vina molecular docking. Agonist-TLR2 interactions were examined using docking results from Biovia Discovery Studio 2021. Tethering is valid; the program can be used because the RMSD is less than 2. The results showed that 6 of the 84 metabolite-profiled compounds were antagonistic to 3A7B and shared similar pharmacophore distances and amino acid linkages with N-acetyl-D-glucosamine, a native ligand of 3A7B. By binding to TLR2, the compounds from the ethyl acetate fraction of M. crenata leaves may potentially inhibit PD progression.","PeriodicalId":365916,"journal":{"name":"Proceedings of International Pharmacy Ulul Albab Conference and Seminar (PLANAR)","volume":"189 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2022-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of International Pharmacy Ulul Albab Conference and Seminar (PLANAR)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.18860/planar.v2i0.1831","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1
Abstract
Parkinson's disease (PD) can be triggered by overactive TLR2 due to α-synuclein abnormalities and aggregation. Marsilea crenata C. Presl. leaves inhibit neuroinflammatory progression. This study aimed to predict the antineuroinflammatory activity of M. crenata leaves with TLR2 (ID 3A7B) in an in silico study. The list of chemicals was collected through metabolite profiling with UPLC-QToF MS/MS, then analyzed for physicochemical properties using SwissADME and toxicity using the ProTox II online program. This analysis confirmed the molecule's safety for therapeutic use. ChemDraw 12.0 was used to build metabolite-profiled compounds. Avogadro 1.2.0 was utilized to optimize geometry, while PyRx 0.8 was used for Autodock Vina molecular docking. Agonist-TLR2 interactions were examined using docking results from Biovia Discovery Studio 2021. Tethering is valid; the program can be used because the RMSD is less than 2. The results showed that 6 of the 84 metabolite-profiled compounds were antagonistic to 3A7B and shared similar pharmacophore distances and amino acid linkages with N-acetyl-D-glucosamine, a native ligand of 3A7B. By binding to TLR2, the compounds from the ethyl acetate fraction of M. crenata leaves may potentially inhibit PD progression.
α-突触核蛋白异常和聚集导致TLR2过度活跃可触发帕金森病(PD)。马氏菌。叶子抑制神经炎症进展。本研究旨在利用TLR2 (ID 3A7B)在计算机上预测牛蒡叶的抗神经炎症活性。通过UPLC-QToF MS/MS代谢物分析收集化学物质清单,然后使用SwissADME进行理化性质分析,使用ProTox II在线程序进行毒性分析。这一分析证实了该分子用于治疗的安全性。使用ChemDraw 12.0构建代谢物谱化合物。利用Avogadro 1.2.0进行几何优化,利用PyRx 0.8进行Autodock Vina分子对接。使用Biovia Discovery Studio 2021的对接结果检查激动剂与tlr2的相互作用。捆绑是有效的;该程序可以使用,因为RMSD小于2。结果表明,84种代谢物谱化合物中有6种对3A7B具有拮抗作用,并且与3A7B的天然配体n -乙酰- d -氨基葡萄糖具有相似的药效团距离和氨基酸键。通过与TLR2结合,这些化合物可能潜在地抑制PD的进展。