Identification of bacterial community in a rapid composting method using 16SrDNA genes sequencing

IF 3.1 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Biodegradation Pub Date : 2023-11-21 DOI:10.1007/s10532-023-10056-z
Muhammad Shahid, Waqar Ahmed, Abdul Basit Khan, Zafar Iqbal Shams, Afsheen Arif
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Abstract

Composting is a process of microbial degradation of organic waste and is commonly applied for waste management. This is a slow process and requires a lot of land and human resources. The present study investigated mechanical augmentation with required microbial culture for composting municipal solid waste (MSW). Thirty isolates were subjected to 16S rDNA PCR amplification and gene sequencing. The isolates' sequencing from the compost samples was processed on BLASTn. Fourteen strains were identified for further experiments. The results divulge that Empedobacter (04), Bacillus (02), Proteus (02), Lactiplantibacillus (01), Klebsiella (01), Citrobacter (01), Brevibacillus (01), E. coli (01) and one unidentified strain were growing during composting. Eleven combinations of bacterial consortium and respective additives were applied for the organic waste decomposition in the next stage, resulting in varied completion periods ranging from 3 to 14 days. Two combinations were completed within 3 days, which are considered ideal combinations for composting. The microbial consortium was significantly diverse, which is a reason for rapid biodegradation. The present study reveals that the technology will be highly feasible for municipal solid waste management in tropical/subtropical countries.

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利用16SrDNA基因测序快速堆肥法鉴定细菌群落。
堆肥是一种微生物降解有机废物的过程,通常用于废物管理。这是一个缓慢的过程,需要大量的土地和人力资源。本研究对城市固体废物堆肥中所需微生物培养的机械强化进行了研究。对30株分离株进行16S rDNA扩增和基因测序。在BLASTn上对堆肥样品中的分离物进行测序。鉴定出14株菌株供进一步实验使用。结果显示,堆肥过程中有Empedobacter(04)、Bacillus(02)、Proteus(02)、Lactiplantibacillus(01)、Klebsiella(01)、Citrobacter(01)、Brevibacillus(01)、E. coli(01)和1株未知菌株的生长。下一阶段采用了11种菌群组合和相应的添加剂进行有机废物分解,完成时间从3天到14天不等。两个组合在3天内完成,被认为是堆肥的理想组合。微生物群落多样性显著,这是生物降解速度快的原因。本研究表明,该技术在热带/亚热带国家的城市固体废物管理中是高度可行的。
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来源期刊
Biodegradation
Biodegradation 工程技术-生物工程与应用微生物
CiteScore
5.60
自引率
0.00%
发文量
36
审稿时长
6 months
期刊介绍: Biodegradation publishes papers, reviews and mini-reviews on the biotransformation, mineralization, detoxification, recycling, amelioration or treatment of chemicals or waste materials by naturally-occurring microbial strains, microbial associations, or recombinant organisms. Coverage spans a range of topics, including Biochemistry of biodegradative pathways; Genetics of biodegradative organisms and development of recombinant biodegrading organisms; Molecular biology-based studies of biodegradative microbial communities; Enhancement of naturally-occurring biodegradative properties and activities. Also featured are novel applications of biodegradation and biotransformation technology, to soil, water, sewage, heavy metals and radionuclides, organohalogens, high-COD wastes, straight-, branched-chain and aromatic hydrocarbons; Coverage extends to design and scale-up of laboratory processes and bioreactor systems. Also offered are papers on economic and legal aspects of biological treatment of waste.
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