A novel cuproptosis-related prognostic gene signature in adrenocortical carcinoma

IF 2.6 4区 医学 Q2 MEDICAL LABORATORY TECHNOLOGY Journal of Clinical Laboratory Analysis Pub Date : 2023-11-23 DOI:10.1002/jcla.24981
Wenjun Gao, Xiaoyan He, Qi Huangfu, Yanqi Xie, Keliang Chen, Chengfang Sun, Jingchao Wei, Bohan Wang
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Abstract

Background

Adrenocortical carcinoma (ACC) is an aggressive and rare malignant tumor associated with poor outcomes. Cuproptosis, a new pattern of cell death, relies on mitochondrial respiration and is associated with protein lipoylation. Increasing evidence has demonstrated the potential roles of cuproptosis in several tumor entities. However, the relationship between cuproptosis and ACC remains unclear.

Methods

In total, 10 cuproptosis-related genes (CRGs) of patients with ACC were obtained from the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases and differential expression analysis of CRGs was analyzed. Functional enrichment of the CRGs was performed and protein–protein interaction analysis was utilized to explore the association between the CRGs. Cuproptosis-related risk score (CRRS) was constructed by Lasso Cox regression and validated.

Results

In the current study, the alteration and expression patterns of 10 CRGs in TCGA–ACC datasets were analyzed. We identified different expression patterns of CRGs in ACCs, discovered strong associations between CRGs and ACCs, and found that the CRGs were associated with immune infiltration in ACCs. A CRRS was created thereafter to predict overall survival (OS). CRRS = (0.083103718) *FDX1 + (−0.278423862) *LIAS+(0.090985682) *DLAT+(−0.018784047) *PDHA1 + (0.297218951) *MTF1 + (0.310197964) *CDKN2A. Patients were divided into high- and low-risk groups based on their CRRS, and independent prognostic factors were investigated. Finally, CDKN2A and FDX1 were found to be independent prognostic predictors of patients with ACC.

Conclusions

CDKN2A and FDX1 are independent prognostic predictors of patients with ACC. Cuproptosis may play a role in the development of ACC, providing a new perspective on therapeutic strategies related to CRGs for cancer prevention and treatment.

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肾上腺皮质癌中一种新的与铜裂相关的预后基因特征。
背景:肾上腺皮质癌(ACC)是一种侵袭性的罕见恶性肿瘤,预后较差。铜胞坏死是一种新的细胞死亡模式,依赖于线粒体呼吸,并与蛋白质脂酰化有关。越来越多的证据表明,铜增生在几种肿瘤实体中的潜在作用。然而,畸形与ACC之间的关系尚不清楚。方法:从基因表达图谱(Gene Expression Omnibus, GEO)和癌症基因组图谱(the Cancer Genome Atlas, TCGA)数据库中获取10个ACC患者铜裂相关基因(cuprotosis - correlation genes, CRGs),对CRGs进行差异表达分析。对CRGs进行功能富集,并利用蛋白-蛋白相互作用分析来探索CRGs之间的关联。采用Lasso Cox回归构建铜中毒相关风险评分(CRRS)并进行验证。结果:本研究分析了TCGA-ACC数据集中10个CRGs的变化和表达模式。我们鉴定了CRGs在ACCs中的不同表达模式,发现了CRGs与ACCs之间的强相关性,并发现CRGs与ACCs的免疫浸润有关。随后建立CRRS来预测总生存期(OS)。Crrs = (0.083103718) * fdx1 +(-0.278423862) * lias +(0.090985682) * dlat +(-0.018784047) * pdha1 +(0.297218951) * mtf1 +(0.310197964) * cdkn2a。根据患者的CRRS分为高危组和低危组,并调查独立预后因素。最后,CDKN2A和FDX1被发现是ACC患者的独立预后预测因子。结论:CDKN2A和FDX1是ACC患者预后的独立预测因子。cuprotosis可能在ACC的发生发展中发挥作用,为研究与CRGs相关的癌症防治治疗策略提供了新的视角。
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来源期刊
Journal of Clinical Laboratory Analysis
Journal of Clinical Laboratory Analysis 医学-医学实验技术
CiteScore
5.60
自引率
7.40%
发文量
584
审稿时长
6-12 weeks
期刊介绍: Journal of Clinical Laboratory Analysis publishes original articles on newly developing modes of technology and laboratory assays, with emphasis on their application in current and future clinical laboratory testing. This includes reports from the following fields: immunochemistry and toxicology, hematology and hematopathology, immunopathology, molecular diagnostics, microbiology, genetic testing, immunohematology, and clinical chemistry.
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