High-Grade Gliomas from Subventricular Zone: Proteomic Drivers of Aggressiveness Using Fluorescence-Guided Multiple Sampling.

IF 2.2 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Omics A Journal of Integrative Biology Pub Date : 2023-12-01 Epub Date: 2023-12-07 DOI:10.1089/omi.2023.0124
Saicharan Ghantasala, Amruth Bhat, Sridhar Epari, Aliasgar Moiyadi, Sanjeeva Srivastava
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Abstract

High-grade gliomas (HGGs) are among the most aggressive brain tumors and are characterized by dismally low median survival time. Of the many factors influencing the survival of patients with HGGs, proximity to the subventricular zone (SVZ) is one of the key influencers. In this context, 5-amino levulinic acid fluorescence-guided multiple sampling (FGMS) offers the prospect of understanding patient-to-patient molecular heterogeneity driving the aggressiveness of these tumors. Using high-resolution liquid chromatography-mass spectrometry (MS)/MS proteomics for HGGs from seven patients (four SVZ associated and three SVZ nonassociated), this study aimed to uncover the mechanisms driving the aggressiveness in SVZ-associated (SVZ+) HGGs. Differential proteomics analysis revealed significant dysregulation of 11 proteins, of which 9 proteins were upregulated and 2 were downregulated in SVZ+ HGGs compared to SVZ-non-associated (SVZ-) HGGs. The gene set enrichment analysis (GSEA) of the proteomics dataset revealed enrichment of MYC targets V1 and V2, G2M checkpoints, and E2F targets in SVZ+ HGGs. With GSEA, we also compared the pathways enriched in glioma stem cell subpopulations and observed a similar expression trend for most pathways in our data. In conclusion, this study reveals new and emerging insights on pathways that may potentially contribute to greater aggressiveness in SVZ+ HGGs. Future studies using FGMS in larger cohorts are recommended to help uncover the proteomics and molecular basis of aggressiveness and stemness in HGGs.

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脑室下区高级别胶质瘤:使用荧光引导多重取样的侵袭性蛋白质组驱动因素
高级别胶质瘤(HGGs)是侵袭性最强的脑肿瘤之一,中位生存时间极短。在影响 HGGs 患者生存的众多因素中,接近室管膜下区(SVZ)是关键的影响因素之一。在这种情况下,5-氨基乙酰丙酸荧光引导多重取样(FGMS)为了解患者间分子异质性驱动这些肿瘤的侵袭性提供了前景。本研究利用高分辨率液相色谱-质谱(MS)/MS蛋白质组学分析了七名患者(四名与SVZ相关,三名与SVZ无关)的HGG,旨在揭示驱动SVZ相关(SVZ+)HGG侵袭性的机制。差异蛋白质组学分析显示,与SVZ非相关性(SVZ-)HGGs相比,SVZ+ HGGs中有11种蛋白质明显失调,其中9种蛋白质上调,2种蛋白质下调。蛋白质组学数据集的基因组富集分析(GSEA)显示,MYC靶点V1和V2、G2M检查点和E2F靶点在SVZ+ HGGs中富集。通过GSEA,我们还比较了在胶质瘤干细胞亚群中富集的通路,并观察到数据中大多数通路的表达趋势相似。总之,本研究揭示了可能导致SVZ+ HGG更具侵袭性的通路的新见解。建议今后在更大的队列中使用FGMS进行研究,以帮助揭示HGGs侵袭性和干性的蛋白质组学和分子基础。
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来源期刊
Omics A Journal of Integrative Biology
Omics A Journal of Integrative Biology 生物-生物工程与应用微生物
CiteScore
6.00
自引率
12.10%
发文量
62
审稿时长
3 months
期刊介绍: OMICS: A Journal of Integrative Biology is the only peer-reviewed journal covering all trans-disciplinary OMICs-related areas, including data standards and sharing; applications for personalized medicine and public health practice; and social, legal, and ethics analysis. The Journal integrates global high-throughput and systems approaches to 21st century science from “cell to society” – seen from a post-genomics perspective.
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