Harnessing the power of curvilinear internal coordinates: from molecular structure prediction to vibrational spectroscopy

IF 1.6 4区 化学 Q4 CHEMISTRY, PHYSICAL Theoretical Chemistry Accounts Pub Date : 2023-11-29 DOI:10.1007/s00214-023-03069-7
Marco Mendolicchio
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Abstract

Different standard VPT2 codes employ Cartesian coordinates for the computation of rotational and vibrational spectroscopic parameters. However, curvilinear internal coordinates offer a number of advantages provided that a general non-redundant set of coordinates can be built and employed in an unsupervised workflow. In the present paper I summarize the main results and perspectives of a general engine employing curvilinear internal coordinates and perturbation theory for the computation of rotational and vibrational spectroscopic parameters of large molecules beyond the conventional rigid rotor/harmonic oscillator model. Some examples concerning biomolecule building blocks are discussed in some detail in order to better analyze the performance of the proposed strategy.

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利用曲线内坐标的力量:从分子结构预测到振动光谱学
不同的标准VPT2代码采用笛卡尔坐标计算旋转和振动光谱参数。然而,如果可以在无监督的工作流中构建和使用一般的非冗余坐标集,则曲线内部坐标提供了许多优点。本文总结了利用曲线内坐标和摄动理论计算大分子旋转和振动光谱参数的通用发动机的主要结果和前景,超越了传统的刚性转子/谐振子模型。为了更好地分析所提出的策略的性能,详细讨论了一些关于生物分子构建块的例子。
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来源期刊
Theoretical Chemistry Accounts
Theoretical Chemistry Accounts 化学-物理化学
CiteScore
3.40
自引率
0.00%
发文量
74
审稿时长
3.8 months
期刊介绍: TCA publishes papers in all fields of theoretical chemistry, computational chemistry, and modeling. Fundamental studies as well as applications are included in the scope. In many cases, theorists and computational chemists have special concerns which reach either across the vertical borders of the special disciplines in chemistry or else across the horizontal borders of structure, spectra, synthesis, and dynamics. TCA is especially interested in papers that impact upon multiple chemical disciplines.
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