Prognostic significance and expression pattern of glucose related genes in breast cancer: A comprehensive computational biology approach

IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Saudi Journal of Biological Sciences Pub Date : 2023-12-10 DOI:10.1016/j.sjbs.2023.103896
Bader Alshehri
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Abstract

Breast cancer (BC) is the most common type of malignancy globally and the main reason why women die from tumours. The Warburg effect, a characteristic of tumor, describes how most solid tumour cells acclimatize to their diverse surroundings by relying heavily on aerobic glycolysis for production of energy. In addition to producing key metabolic intermediates that are crucial for the production of macromolecules, which enable cancer cell division, invasiveness, and drug resistance, the transformed energy metabolism also supplies tumor cells with ATP for cellular energy. Here, we evaluated the expression profile, prognostic significance, and clinical relevance of glucose-related genes in BC using a bioinformatic approach. To clarify the significance of glucose-related genes in the development of breast tumours, we also performed a functional enrichment investigation of deregulated genes using the STRING and KEGG portal. The study depicted that of the 61 genes examined, 8 genes had a fold change </=± 1.5, that is, ADH1C, ADH4, ALDH1A3, ALDOC, FBP1, PCK1, PFKFB1, PFKFB3. Among the highly deregulated genes, ADH1C showed a fold change of −6.669. These deregulated genes were associated with poor prognosis. The study signifies that glucose related genes are highly dysregulated in breast cancer. Deregulation of glucose related genes is linked with a poor prognosis in BC individuals. Thus, targeting glucose related genes will provide an effective treatment approach for BC individuals.

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乳腺癌中葡萄糖相关基因的表达模式和预后意义:综合计算生物学方法
乳腺癌(BC)是全球最常见的恶性肿瘤,也是妇女死于肿瘤的主要原因。沃伯格效应是肿瘤的一个特征,它描述了大多数实体瘤细胞如何通过严重依赖有氧糖酵解来产生能量,从而适应其周围的各种环境。除了产生对生产大分子至关重要的关键代谢中间产物,使癌细胞得以分裂、具有侵袭性和抗药性外,转化的能量代谢还为肿瘤细胞提供 ATP 作为细胞能量。在此,我们采用生物信息学方法评估了与葡萄糖相关的基因在巴氏癌中的表达谱、预后意义和临床相关性。为了明确葡萄糖相关基因在乳腺肿瘤发生发展中的意义,我们还利用 STRING 和 KEGG 门户对失调基因进行了功能富集调查。研究显示,在61个受检基因中,有8个基因的变化倍数为</=± 1.5,即ADH1C、ADH4、ALDH1A3、ALDOC、FBP1、PCK1、PFKFB1、PFKFB3。在高度失调的基因中,ADH1C 的折叠变化为-6.669。这些失调基因与预后不良有关。这项研究表明,葡萄糖相关基因在乳腺癌中高度失调。葡萄糖相关基因的失调与乳腺癌患者的不良预后有关。因此,靶向葡萄糖相关基因将为乳腺癌患者提供一种有效的治疗方法。
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来源期刊
CiteScore
9.30
自引率
4.50%
发文量
551
审稿时长
34 days
期刊介绍: Saudi Journal of Biological Sciences is an English language, peer-reviewed scholarly publication in the area of biological sciences. Saudi Journal of Biological Sciences publishes original papers, reviews and short communications on, but not limited to: • Biology, Ecology and Ecosystems, Environmental and Biodiversity • Conservation • Microbiology • Physiology • Genetics and Epidemiology Saudi Journal of Biological Sciences is the official publication of the Saudi Society for Biological Sciences and is published by King Saud University in collaboration with Elsevier and is edited by an international group of eminent researchers.
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