{"title":"Using Bayesian phylogenetics to infer manuscript transmission history","authors":"Joey McCollum, Robert Turnbull","doi":"10.1093/llc/fqad089","DOIUrl":null,"url":null,"abstract":"Bayesian phylogenetic methods offer various models that would be especially suitable in the reconstruction of textual traditions, but text-critical applications of phylogenetics to date have generally not taken advantage of these features. In this article, we offer a way forward for text-critical phylogenetics. On the side of theory, we highlight multiple Bayesian phylogenetic models and discuss their relevance to textual criticism. More practically, we show how TEI XML collations of textual traditions can be encoded to facilitate robust analyses using these models in BEAST 2, with the teiphy Python package mediating the conversion from TEI XML to BEAST XML. Finally, we give a proof of concept for this approach, showing that the results of BEAST 2 analyses of a sample collation of the Epistle to the Ephesians under different clock models cohere with established findings on the textual tradition of this work.","PeriodicalId":45315,"journal":{"name":"Digital Scholarship in the Humanities","volume":"58 1","pages":""},"PeriodicalIF":0.7000,"publicationDate":"2023-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Digital Scholarship in the Humanities","FirstCategoryId":"98","ListUrlMain":"https://doi.org/10.1093/llc/fqad089","RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"0","JCRName":"HUMANITIES, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Bayesian phylogenetic methods offer various models that would be especially suitable in the reconstruction of textual traditions, but text-critical applications of phylogenetics to date have generally not taken advantage of these features. In this article, we offer a way forward for text-critical phylogenetics. On the side of theory, we highlight multiple Bayesian phylogenetic models and discuss their relevance to textual criticism. More practically, we show how TEI XML collations of textual traditions can be encoded to facilitate robust analyses using these models in BEAST 2, with the teiphy Python package mediating the conversion from TEI XML to BEAST XML. Finally, we give a proof of concept for this approach, showing that the results of BEAST 2 analyses of a sample collation of the Epistle to the Ephesians under different clock models cohere with established findings on the textual tradition of this work.
期刊介绍:
DSH or Digital Scholarship in the Humanities is an international, peer reviewed journal which publishes original contributions on all aspects of digital scholarship in the Humanities including, but not limited to, the field of what is currently called the Digital Humanities. Long and short papers report on theoretical, methodological, experimental, and applied research and include results of research projects, descriptions and evaluations of tools, techniques, and methodologies, and reports on work in progress. DSH also publishes reviews of books and resources. Digital Scholarship in the Humanities was previously known as Literary and Linguistic Computing.