Multi-class Tissue Segmentation of CT images using an Ensemble Deep Learning method.

Naghmeh Mahmoodian, Sumit Chakrabarty, Marilena Georgiades, Maciej Pech, Christoph Hoeschen
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Abstract

Microwave ablation (MWA) therapy is a well-known technique for locally destroying lung tumors with the help of computed tomography (CT) images. However, tumor recurrence occurs because of insufficient ablation of the tumor. In order to perform an accurate treatment of lung cancer, there is a demand to determine the tumor area precisely. To address the problem at hand, which involves accurately segmenting organs and tumors in CT images obtained during MWA therapy, physicians could benefit from a semantic segmentation method. However, such a method typically requires a large number of images to achieve optimal results through deep learning techniques. To overcome this challenge, our team developed four different (multiple) U-Net based semantic segmentation models that work in conjunction with one another to produce a more precise segmented image, even when working with a relatively small dataset. By combining the highest weight value of segmentation from multiple methods into a single output, we can achieve a more reliable and accurate segmentation outcome. Our approach proved successful in segmenting four different tissue structures, including lungs, lung tumors, and ablated tissues in CT medical images. The Intersection over Union (IoU) is employed to quantitatively evaluate the proposed method. The method shows the highest average IoU, with 0.99 for the background, 0.98 for the lung, 0.77 for the ablated, and 0.54 for the tumor tissue. The results show that employing multiple DL methods is superior to that of individual base-learner models for all four different tissue structures, even in the presence of the relatively small dataset.Clinical relevance- An essential issue of tumor ablation therapy is to know when the entire tumor tissue has completely been destroyed. However, as it is difficult to distinguish between destroyed and living tumor, this is hardly reliable in clinical practice during MWA therapy, especially when working with a small dataset. Improved AI segmentation methods can help to improve performance to reduce recurrence.

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使用集合深度学习方法对 CT 图像进行多类组织分割。
微波消融(MWA)疗法是一种借助计算机断层扫描(CT)图像局部摧毁肺部肿瘤的著名技术。然而,由于对肿瘤的消融不够,肿瘤会复发。为了准确治疗肺癌,需要精确确定肿瘤的面积。为了解决目前的问题,即在 MWA 治疗过程中准确分割 CT 图像中的器官和肿瘤,医生可以从语义分割方法中获益。然而,这种方法通常需要大量图像,才能通过深度学习技术达到最佳效果。为了克服这一挑战,我们的团队开发了四种不同的(多重)基于 U-Net 的语义分割模型,这些模型相互配合,即使在处理相对较小的数据集时,也能生成更精确的分割图像。通过将多种方法的最高分割权重值合并为单一输出,我们可以获得更可靠、更精确的分割结果。事实证明,我们的方法成功地分割了四种不同的组织结构,包括 CT 医学影像中的肺、肺肿瘤和消融组织。我们采用了 "交集大于联合"(IoU)来定量评估所提出的方法。该方法的平均 IoU 值最高,背景为 0.99,肺部为 0.98,消融组织为 0.77,肿瘤组织为 0.54。结果表明,对于所有四种不同的组织结构,即使在数据集相对较小的情况下,采用多重 DL 方法也优于单个基础学习模型。然而,由于很难区分被破坏的肿瘤和存活的肿瘤,因此在 MWA 治疗的临床实践中,尤其是在使用较小的数据集时,这一点几乎不可靠。改进人工智能分割方法有助于提高性能,减少复发。
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