TransResU-Net: A Transformer based ResU-Net for Real-Time Colon Polyp Segmentation.

Nikhil Kumar Tomar, Annie Shergill, Brandon Rieders, Ulas Bagci, Debesh Jha
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Abstract

Colorectal cancer (CRC) is one of the most common causes of cancer and cancer-related mortality worldwide. Performing colon cancer screening in a timely fashion is the key to early detection. Colonoscopy is the primary modality used to diagnose colon cancer. However, the miss rate of polyps, adenomas and advanced adenomas remains significantly high. Early detection of polyps at the precancerous stage can help reduce the mortality rate and the economic burden associated with colorectal cancer. Deep learning-based computer-aided diagnosis (CADx) system may help gastroenterologists to identify polyps that may otherwise be missed, thereby improving the polyp detection rate. Additionally, CADx system could prove to be a cost-effective system that improves long-term colorectal cancer prevention. In this study, we proposed a deep learning-based architecture for automatic polyp segmentation called Transformer ResU-Net (TransResU-Net). Our proposed architecture is built upon residual blocks with ResNet-50 as the backbone and takes advantage of the transformer self-attention mechanism as well as dilated convolution(s). Our experimental results on two publicly available polyp segmentation benchmark datasets showed that TransResU-Net obtained a highly promising dice score and a real-time speed. With high efficacy in our performance metrics, we concluded that TransResU-Net could be a strong benchmark for building a real-time polyp detection system for the early diagnosis, treatment, and prevention of colorectal cancer. The source code of the proposed TransResU-Net is publicly available at https://github.com/nikhilroxtomar/TransResUNet.

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TransResU-Net:基于变压器的实时结肠息肉分割 ResU-Net。
结肠直肠癌(CRC)是全球最常见的癌症和癌症相关死亡原因之一。及时进行结肠癌筛查是早期发现的关键。结肠镜检查是诊断结肠癌的主要方法。然而,息肉、腺瘤和晚期腺瘤的漏诊率仍然很高。在癌前病变阶段及早发现息肉有助于降低与结直肠癌相关的死亡率和经济负担。基于深度学习的计算机辅助诊断(CADx)系统可以帮助消化科医生识别可能被遗漏的息肉,从而提高息肉检出率。此外,CADx 系统还可能被证明是一种具有成本效益的系统,可提高结直肠癌的长期预防率。在这项研究中,我们提出了一种基于深度学习的息肉自动分割架构,名为 Transformer ResU-Net(TransResU-Net)。我们提出的架构建立在以 ResNet-50 为骨干的残差块上,并利用了变换器自注意机制和扩张卷积的优势。我们在两个公开的息肉分割基准数据集上的实验结果表明,TransResU-Net 获得了非常可观的骰子分数和实时速度。由于性能指标的高效性,我们认为 TransResU-Net 可以作为建立实时息肉检测系统的有力基准,用于结直肠癌的早期诊断、治疗和预防。TransResU-Net 的源代码可在 https://github.com/nikhilroxtomar/TransResUNet 网站上公开获取。
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