Generic algebraic conditions for the occurrence of switch-like behavior of a chemical kinetic system of the hypoxia pathway

IF 1.8 4区 生物学 Q3 BIOPHYSICS Journal of Biological Physics Pub Date : 2023-12-21 DOI:10.1007/s10867-023-09647-x
Quentin Vanhaelen
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Abstract

Weakly reversible chemical reaction networks with zero deficiency associated with mass-action kinetics admit, within each positive stoichiometric compatibility class, one positive steady state which is locally asymptotically stable and this irrespective of the values of the kinetics constants. Networks which do not enjoy these structural properties potentially exhibit more diverse dynamical behaviors. In this article, we consider a chemical reaction network associated with mass-action kinetics which is not weakly reversible and has a deficiency larger than one. The chemical reactions are at most bimolecular, but inflow and outflow reactions are present. Our results are as follows. We establish the existence of positive steady-state solutions and obtain their analytic expressions in the concentration space and in convex coordinates. We show that the system fulfills necessary conditions for a saddle-node and for a bifurcation into a saddle and a node. We apply a constructive approach to obtain a set of numerical values for the state variables and kinetic parameters, not reported previously, such that the reduced Jacobian is characterized by a zero eigenvalue with all other eigenvalues having negative real parts. The bifurcation diagram confirms the presence of the switch-like behavior.

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缺氧通路化学动力学系统出现开关样行为的通用代数条件。
与质量作用动力学相关的零缺陷弱可逆化学反应网络,在每个正化学计量相容性类别中,都有一个局部渐近稳定的正稳定状态,而且与动力学常数的值无关。不具备这些结构特性的网络可能会表现出更多样的动力学行为。在本文中,我们考虑了一个与质量-作用动力学相关的化学反应网络,该网络不具有弱可逆性,且缺陷大于 1。化学反应最多为双分子反应,但存在流入和流出反应。我们的结果如下。我们确定了正稳态解的存在,并得到了它们在浓度空间和凸坐标中的解析表达式。我们证明该系统满足鞍状节点以及鞍状和节点分岔的必要条件。我们采用一种构造方法,为状态变量和动力学参数获得了一组数值,这组数值以前未曾报道过,从而使还原雅各布方程的特征为零特征值,所有其他特征值的实部为负。分岔图证实了开关样行为的存在。
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来源期刊
Journal of Biological Physics
Journal of Biological Physics 生物-生物物理
CiteScore
3.00
自引率
5.60%
发文量
20
审稿时长
>12 weeks
期刊介绍: Many physicists are turning their attention to domains that were not traditionally part of physics and are applying the sophisticated tools of theoretical, computational and experimental physics to investigate biological processes, systems and materials. The Journal of Biological Physics provides a medium where this growing community of scientists can publish its results and discuss its aims and methods. It welcomes papers which use the tools of physics in an innovative way to study biological problems, as well as research aimed at providing a better understanding of the physical principles underlying biological processes.
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