Genome analysis of vB_SupP_AX, a novel N4-like phage infecting Sulfitobacter.

IF 2.3 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY International Microbiology Pub Date : 2024-08-01 Epub Date: 2024-01-08 DOI:10.1007/s10123-023-00476-5
Yundan Liu, Chengrui Zhu, Yantao Liang, Andrew McMinn, Kaiyang Zheng, Ziyue Wang, Hongmin Wang, Linyi Ren, Hongbing Shao, Yeong Yik Sung, Wen Jye Mok, Li Lian Wong, Min Wang
{"title":"Genome analysis of vB_SupP_AX, a novel N4-like phage infecting Sulfitobacter.","authors":"Yundan Liu, Chengrui Zhu, Yantao Liang, Andrew McMinn, Kaiyang Zheng, Ziyue Wang, Hongmin Wang, Linyi Ren, Hongbing Shao, Yeong Yik Sung, Wen Jye Mok, Li Lian Wong, Min Wang","doi":"10.1007/s10123-023-00476-5","DOIUrl":null,"url":null,"abstract":"<p><p>Sulfitobacter is a bacterium recognized for its production of AMP-independent sulfite oxidase, which is instrumental in the creation of sulfite biosensors. This capability underscores its ecological and economic relevance. In this study, we present a newly discovered phage, Sulfitobacter phage vB_SupP_AX, which was isolated from Maidao of Qingdao, China. The vB_SupP_AX genome is linear and double-stranded and measures 75,445 bp with a GC content of 49%. It encompasses four transfer RNA (tRNA) sequences and 79 open reading frames (ORFs), one of which is an auxiliary metabolic gene encoding thioredoxin. Consistent with other N4-like phages, vB_SupP_AX possesses three distinct RNA polymerases and is characterized by the presence of four tRNA molecules. Comparative genomic and phylogenetic analyses position vB_SupP_AX and three other viral genomes from the Integrated Microbial Genomes/Virus v4 database within the Rhodovirinae virus subfamily. The identification of vB_SupP_AX enhances our understanding of virus-host interactions within marine ecosystems.</p>","PeriodicalId":14318,"journal":{"name":"International Microbiology","volume":" ","pages":"1297-1306"},"PeriodicalIF":2.3000,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s10123-023-00476-5","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/8 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Sulfitobacter is a bacterium recognized for its production of AMP-independent sulfite oxidase, which is instrumental in the creation of sulfite biosensors. This capability underscores its ecological and economic relevance. In this study, we present a newly discovered phage, Sulfitobacter phage vB_SupP_AX, which was isolated from Maidao of Qingdao, China. The vB_SupP_AX genome is linear and double-stranded and measures 75,445 bp with a GC content of 49%. It encompasses four transfer RNA (tRNA) sequences and 79 open reading frames (ORFs), one of which is an auxiliary metabolic gene encoding thioredoxin. Consistent with other N4-like phages, vB_SupP_AX possesses three distinct RNA polymerases and is characterized by the presence of four tRNA molecules. Comparative genomic and phylogenetic analyses position vB_SupP_AX and three other viral genomes from the Integrated Microbial Genomes/Virus v4 database within the Rhodovirinae virus subfamily. The identification of vB_SupP_AX enhances our understanding of virus-host interactions within marine ecosystems.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
新型 N4 类噬菌体 vB_SupP_AX 的基因组分析。
亚硫酸盐杆菌是一种公认的能产生不依赖于 AMP 的亚硫酸盐氧化酶的细菌,这种氧化酶在制造亚硫酸盐生物传感器方面发挥着重要作用。这种能力凸显了它在生态和经济方面的重要性。在本研究中,我们介绍了一种新发现的噬菌体--硫酸杆菌噬菌体 vB_SupP_AX,它是从中国青岛麦岛分离出来的。vB_SupP_AX 基因组为线性双链,长度为 75,445 bp,GC 含量为 49%。它包括四个转运核糖核酸(tRNA)序列和 79 个开放阅读框(ORF),其中一个是编码硫代氧化酶的辅助代谢基因。与其他类似 N4 的噬菌体一样,vB_SupP_AX 拥有三种不同的 RNA 聚合酶,并以存在四个 tRNA 分子为特征。比较基因组学和系统发生学分析将 vB_SupP_AX 和集成微生物基因组/病毒 v4 数据库中的其他三个病毒基因组定位在 Rhodovirinae 病毒亚家族中。vB_SupP_AX 的鉴定加深了我们对海洋生态系统中病毒-宿主相互作用的了解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
International Microbiology
International Microbiology 生物-生物工程与应用微生物
CiteScore
5.50
自引率
3.20%
发文量
67
审稿时长
3 months
期刊介绍: International Microbiology publishes information on basic and applied microbiology for a worldwide readership. The journal publishes articles and short reviews based on original research, articles about microbiologists and their work and questions related to the history and sociology of this science. Also offered are perspectives, opinion, book reviews and editorials. A distinguishing feature of International Microbiology is its broadening of the term microbiology to include eukaryotic microorganisms.
期刊最新文献
Diesel-degradation by indigenous bacteria of petroleum-contaminated soils. Rapid on-site detection of viable Vibrio parahaemolyticus in seafood using cis-diamminedichloroplatinum and colorimetric loop-mediated isothermal amplification (CDDP-LAMP). Scrutinizing harsh habitats endophytic fungi and their prospective effect on water-stressed maize seedlings. Effect of calf separation on gut microbiome and fecal metabolome of mother in the captive Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis). Unstable pathogen profile in spotted seal (Phoca largha) gut microbiota and limited turnover with habitat microbiome.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1