Noise robustness and metabolic load determine the principles of central dogma regulation.

ArXiv Pub Date : 2024-08-15
Teresa W Lo, Han James Choi, Dean Huang, Paul A Wiggins
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Abstract

The processes of gene expression are inherently stochastic, even for essential genes required for growth. How does the cell maximize fitness in light of noise? To answer this question, we build a mathematical model to explore the trade-off between metabolic load and growth robustness. The model predicts novel principles of central dogma regulation: Optimal protein expression levels for many genes are in vast overabundance. Essential genes are transcribed above a lower limit of one message per cell cycle. Gene expression is achieved by load balancing between transcription and translation. We present evidence that each of these novel regulatory principles is observed. These results reveal that robustness and metabolic load determine the global regulatory principles that govern gene expression processes, and these principles have broad implications for cellular function.

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噪音稳健性和新陈代谢负荷决定了中枢教条调节的原则。
基因表达过程本身具有随机性,即使是生长所需的重要基因也是如此。细胞如何在噪声中最大限度地提高适应性?为了回答这个问题,我们建立了一个数学模型来探索新陈代谢负荷与生长稳健性之间的权衡。该模型预测了新的中枢调控原则:最佳蛋白质表达水平远远过剩。重要基因的转录量超过每个细胞周期一条信息的下限。基因表达是通过转录和翻译之间的负载平衡实现的。我们的研究表明,这些新的调控原则中的每一个都被观察到了。这些结果表明,稳健性和新陈代谢负荷决定了支配中枢教条功能的全局调控原则,而这些原则对细胞功能有着广泛的影响。
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