Complete mitochondrial genome of soil-dwelling Tyraphus nitidus Raffray, 1909 (Staphylinidae: Pselaphinae)

Pub Date : 2024-01-20 DOI:10.1016/j.japb.2024.01.002
Yeon-Jae Choi , Sangil Kim , Jong-Seok Park
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引用次数: 0

Abstract

We sequenced the complete mitochondrial genome of the soil-dwelling rove beetle Tyraphus nitidus Raffray, 1909, from Korea. The mitochondrial genome was 16,742 bp in length and consists of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and two ribosomal RNA genes (rRNAs). Except cox2, cox3, which use single T residue, and nad4, nad5, which use single A residue, typical PCGs use mitochondrial stop codon (TAR). The nucleotide base composition of the mitogenome is 42.2 % (A), 8.4 % (G), 36.6 % (T), and 12.8 % (C). Our phylogenetic analyses under the maximum likelihood and Bayesian inferences produced a tree congruent in topology, placing the newly sequenced T. nitidus as sister to Diartiger fossulatus Sharp, 1883, within the subfamily Pselaphinae.

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生活在土壤中的 Tyraphus nitidus Raffray, 1909 (Staphylinidae: Pselaphinae) 的完整线粒体基因组
我们对来自韩国的土栖鼠甲Tyraphus nitidus Raffray, 1909的完整线粒体基因组进行了测序。线粒体基因组全长 16,742 bp,由 13 个蛋白质编码基因(PCGs)、22 个转运 RNA 基因(tRNAs)和 2 个核糖体 RNA 基因(rRNAs)组成。除 cox2、cox3 使用单 T 残基和 nad4、nad5 使用单 A 残基外,其他 PCG 均使用线粒体终止密码子(TAR)。有丝分裂基因组的核苷酸碱基组成为:42.2%(A)、8.4%(G)、36.6%(T)和 12.8%(C)。根据最大似然法和贝叶斯推断法进行的系统发育分析产生了一棵拓扑结构一致的树,将新测序的 T. nitidus 与 Diartiger fossulatus Sharp, 1883 并列为蝶形亚科中的姊妹亚科。
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