The complete chloroplast genome of Mangifera similis Blume (Anacardiaceae) from Bangka Island, Indonesia

Pub Date : 2024-01-18 DOI:10.1016/j.japb.2023.12.012

Vivi Yuskianti , Arief Priyadi , Ria Cahyaningsih , Deden D. Matra , Rifki Sadikin , Sri Rahayu

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Abstract

The chloroplast genome structures and its phylogenetic relationship were studied in Mangifera similis Blume from Bangka Island, Indonesia. The total size of the chloroplast genome was 158,977 bp, comprising large single copy (LSC) region (87,764 bp, 55.21 %), small single copy (SSC) region (18,423 bp, 11.59 %) and two inverted repeat regions (IRs) (26,395 bp, 16.60 %). As many as 132 genes (112 are unique) were recognized within the M. similis chloroplast genome, including 87 (80 are unique) protein-coding genes, 37 tRNAs (28 are unique), and eight rRNAs (4 are unique). Phylogeny analysis of the 22 species in the Anacardiaceae showed distinct genetic relationships between its six genera. The eight Mangifera species were divided into two groups, the first consisting of three subgroups of M. similis, M. odorata, M. longipes, M. persiciforma, and M. hiemalis, while in the second group, eight M. indica samples formed a monophyletic group which was sister to M. sylvatica and M. siamensis. The closest genetic relationships between M. similis and M. odorata need to be clarified using more Mangifera genome studies, especially those included in the IUCN Redlist. The first report of the M. similis cp genome will be useful for its phylogenetics, taxonomy, and conservation.

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印度尼西亚邦加岛 Mangifera similis Blume（无患子科）的完整叶绿体基因组

研究了印度尼西亚邦加岛Mangifera similis Blume的叶绿体基因组结构及其系统发育关系。叶绿体基因组的总大小为 158,977 bp，包括大型单拷贝（LSC）区（87,764 bp，占 55.21%）、小型单拷贝（SSC）区（18,423 bp，占 11.59%）和两个倒位重复区（IRs）（26,395 bp，占 16.60%）。在 M. similis 叶绿体基因组中发现了多达 132 个基因（112 个是唯一的），包括 87 个蛋白质编码基因（80 个是唯一的）、37 个 tRNA（28 个是唯一的）和 8 个 rRNA（4 个是唯一的）。对天南星科 22 个物种的系统进化分析表明，其六个属之间存在明显的遗传关系。8 个 Mangifera 种类被分为两组，第一组由 M. similis、M. odorata、M. longipes、M. persiciforma 和 M. hiemalis 三个亚群组成，而在第二组中，8 个 M. indica 样品形成了一个单系群，与 M. sylvatica 和 M. siamensis 是姐妹群。M.similis和M. odorata之间最密切的遗传关系需要通过更多的Mangifera基因组研究来澄清，特别是那些被列入世界自然保护联盟红色名录的Mangifera基因组研究。M.similis cp基因组的首次报告将对其系统发育学、分类学和保护很有帮助。

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