Both-strand gene coding in a plastome-like mitogenome of an enoplid nematode

IF 1.8 3区 生物学 Q3 DEVELOPMENTAL BIOLOGY Journal of experimental zoology. Part B, Molecular and developmental evolution Pub Date : 2024-02-06 DOI:10.1002/jez.b.23241
Olga V. Nikolaeva, Leonid Yu Rusin, Kirill V. Mikhailov, Vladimir V. Aleoshin, Paul De Ley
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Abstract

The phylum Nematoda remains very poorly sampled for mtDNA, with a strong bias toward parasitic, economically important or model species of the Chromadoria lineage. Most chromadorian mitogenomes share a specific order of genes encoded on one mtDNA strand. However, the few sequenced representatives of the Dorylaimia lineage exhibit a variable order of mtDNA genes encoded on both strands. While the ancestral arrangement of nematode mitogenome remains undefined, no evidence has been reported for Enoplia, the phylum's third early divergent major lineage. We describe the first mitogenome of an enoplian nematode, Campydora demonstrans, and contend that the complete 37-gene repertoire and both-strand gene encoding are ancestral states preserved in Enoplia and Dorylaimia versus the derived mitogenome arrangement in some Chromadoria. The C. demonstrans mitogenome is 17,018 bp in size and contains a noncoding perfect inverted repeat with 2013 bp-long arms, subdividing the mitogenome into two coding regions. This mtDNA arrangement is very rare among animals and instead resembles that of chloroplast genomes in land plants. Our report broadens mtDNA taxonomic sampling of the phylum Nematoda and adds support to the applicability of cox1 gene as a phylogenetic marker for establishing nematode relationships within higher taxa.

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酵母线虫类质粒体有丝分裂基因组中的双链基因编码。
线虫动物门的 mtDNA 取样仍然非常少,主要偏向于寄生、具有重要经济价值或模式物种的 Chromadoria 系。大多数有丝分裂虫的有丝分裂基因组都在一条 mtDNA 链上共享特定顺序的基因编码。然而,Dorylaimia 系的少数测序代表却表现出在两条链上编码的 mtDNA 基因顺序各不相同。虽然线虫有丝分裂基因组的祖先排列方式仍未确定,但对于该门类的第三个早期分化主系--Enoplia,还没有任何证据报道。我们描述了 Enoplia 线虫--Campydora demonstrans 的第一个有丝分裂基因组,并认为完整的 37 个基因剧目和双链基因编码是 Enoplia 和 Dorylaimia 中保留的祖先状态,而一些 Chromadoria 中则是衍生的有丝分裂基因组排列。C. demonstrans的有丝分裂基因组大小为17,018 bp,包含一个长达2013 bp的非编码完美倒置重复臂,将有丝分裂基因组细分为两个编码区。这种mtDNA排列方式在动物中非常罕见,而与陆地植物叶绿体基因组的排列方式相似。我们的报告拓宽了线虫门的 mtDNA 分类取样范围,并支持将 cox1 基因作为系统发育标记,用于确定线虫在高等类群中的关系。
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来源期刊
CiteScore
4.80
自引率
9.10%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Developmental Evolution is a branch of evolutionary biology that integrates evidence and concepts from developmental biology, phylogenetics, comparative morphology, evolutionary genetics and increasingly also genomics, systems biology as well as synthetic biology to gain an understanding of the structure and evolution of organisms. The Journal of Experimental Zoology -B: Molecular and Developmental Evolution provides a forum where these fields are invited to bring together their insights to further a synthetic understanding of evolution from the molecular through the organismic level. Contributions from all these branches of science are welcome to JEZB. We particularly encourage submissions that apply the tools of genomics, as well as systems and synthetic biology to developmental evolution. At this time the impact of these emerging fields on developmental evolution has not been explored to its fullest extent and for this reason we are eager to foster the relationship of systems and synthetic biology with devo evo.
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