Automatically Identifying Financial Stress Information from Clinical Notes for Patients with Prostate Cancer.

V Zhu, L Lenert, B Bunnell, J Obeid, M Jefferson, C H Halbert
{"title":"Automatically Identifying Financial Stress Information from Clinical Notes for Patients with Prostate Cancer.","authors":"V Zhu, L Lenert, B Bunnell, J Obeid, M Jefferson, C H Halbert","doi":"10.61545/crr-1-102","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Financial stress, one of the social determinants, is common among cancer patients because of high out-ofpocket costs for treatment, as well as indirect costs. The National Academy of Medicine (NAM) has advised providers to recognize and discuss cost concerns with patients in order to enhance shared decision-making for treatment and exploration of financial assistant programs. However, financial stress is rarely assessed in clinical practice or research, thus, under-coded and under-documented in clinical practice. Natural language processing (NLP) offers great potential that can automatically extract and process data on financial stress from clinical free text existing in the patient electronic health record (EHR).</p><p><strong>Methods: </strong>We developed and evaluated an NLP approach to identify financial stress from clinical narratives for patients with prostate cancer. Of 4,195 eligible prostate cancer patients, we randomly sampled 3,138 patients (75%) as a training dataset (150,990 documents) to develop a financial stress lexicon and NLP algorithms iteratively. The remaining 1,057 patients (25%) were used as a test dataset (55,516 documents) to evaluate the NLP algorithm performance. The common terms representing financial stress were \"financial concerns,\" \"unable to afford,\" \"insurance issue,\" \"unemployed,\" and \"financial assistance.\" Negations were used to exclude false mentions of financial stress.</p><p><strong>Results: </strong>Applying both pre- and post-negation, the NLP algorithm identified 209 patients (6.0%) from the training sample and 66 patients (6.2%) with 161 notes from the test sample as having documented financial stress. Two independent domain experts manually reviewed all 161 notes with NLP identified positives and randomly selected 161 notes with NLP-identified negatives, the NLP algorithm yielded 0.86 for precision, 1 for recall, and 0.9.2 for F-score.</p><p><strong>Conclusions: </strong>Financial stress information is not commonly documented in the EHR, neither in structured format nor in clinical narratives. However, natural language processing can accurately extract financial stress information from clinical notes when such narrative information is available.</p>","PeriodicalId":516857,"journal":{"name":"Cancer research and reports","volume":"1 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10840090/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Cancer research and reports","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.61545/crr-1-102","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Background: Financial stress, one of the social determinants, is common among cancer patients because of high out-ofpocket costs for treatment, as well as indirect costs. The National Academy of Medicine (NAM) has advised providers to recognize and discuss cost concerns with patients in order to enhance shared decision-making for treatment and exploration of financial assistant programs. However, financial stress is rarely assessed in clinical practice or research, thus, under-coded and under-documented in clinical practice. Natural language processing (NLP) offers great potential that can automatically extract and process data on financial stress from clinical free text existing in the patient electronic health record (EHR).

Methods: We developed and evaluated an NLP approach to identify financial stress from clinical narratives for patients with prostate cancer. Of 4,195 eligible prostate cancer patients, we randomly sampled 3,138 patients (75%) as a training dataset (150,990 documents) to develop a financial stress lexicon and NLP algorithms iteratively. The remaining 1,057 patients (25%) were used as a test dataset (55,516 documents) to evaluate the NLP algorithm performance. The common terms representing financial stress were "financial concerns," "unable to afford," "insurance issue," "unemployed," and "financial assistance." Negations were used to exclude false mentions of financial stress.

Results: Applying both pre- and post-negation, the NLP algorithm identified 209 patients (6.0%) from the training sample and 66 patients (6.2%) with 161 notes from the test sample as having documented financial stress. Two independent domain experts manually reviewed all 161 notes with NLP identified positives and randomly selected 161 notes with NLP-identified negatives, the NLP algorithm yielded 0.86 for precision, 1 for recall, and 0.9.2 for F-score.

Conclusions: Financial stress information is not commonly documented in the EHR, neither in structured format nor in clinical narratives. However, natural language processing can accurately extract financial stress information from clinical notes when such narrative information is available.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
从前列腺癌患者的临床笔记中自动识别财务压力信息。
背景:经济压力是社会决定因素之一,在癌症患者中很常见,因为治疗的自付费用和间接费用都很高。美国国家医学科学院(NAM)建议医疗服务提供者认识到并与患者讨论费用问题,以加强共同决策治疗和探索经济援助计划。然而,经济压力很少在临床实践或研究中得到评估,因此在临床实践中编码和记录不足。自然语言处理(NLP)提供了巨大的潜力,可以从患者电子健康记录(EHR)中的临床自由文本中自动提取和处理有关经济压力的数据:我们开发并评估了一种从前列腺癌患者临床叙述中识别经济压力的 NLP 方法。在4,195名符合条件的前列腺癌患者中,我们随机抽取了3,138名患者(75%)作为训练数据集(150,990份文档),以反复开发财务压力词典和NLP算法。剩余的 1,057 名患者(25%)被用作测试数据集(55,516 份文件),以评估 NLP 算法的性能。代表经济压力的常见术语有 "经济问题"、"负担不起"、"保险问题"、"失业 "和 "经济援助"。使用否定法排除了对财务压力的错误提及:使用否定前和否定后,NLP 算法从训练样本中识别出 209 名患者(6.0%)有财务压力记录,从测试样本中识别出 66 名患者(6.2%)(共 161 条记录)有财务压力记录。两位独立的领域专家人工审核了所有 161 份 NLP 鉴定为阳性的记录,并随机选择了 161 份 NLP 鉴定为阴性的记录,NLP 算法的精确度为 0.86,召回率为 1,F-score 为 0.9.2:经济压力信息在电子病历中并不常见,无论是结构化格式还是临床叙述都是如此。但是,如果有此类叙述信息,自然语言处理可以从临床笔记中准确提取财务压力信息。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Automatically Identifying Financial Stress Information from Clinical Notes for Patients with Prostate Cancer.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1