Epitranscriptomic regulation in fasting hearts: implications for cardiac health.

IF 3.6 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY RNA Biology Pub Date : 2024-01-01 Epub Date: 2024-02-07 DOI:10.1080/15476286.2024.2307732
Daniel Benak, Kristyna Holzerova, Jaroslav Hrdlicka, Frantisek Kolar, Mark Olsen, Mati Karelson, Marketa Hlavackova
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Abstract

Cardiac tolerance to ischaemia can be increased by dietary interventions such as fasting, which is associated with significant changes in myocardial gene expression. Among the possible mechanisms of how gene expression may be altered are epigenetic modifications of RNA - epitranscriptomics. N6-methyladenosine (m6A) and N6,2'-O-dimethyladenosine (m6Am) are two of the most prevalent modifications in mRNA. These methylations are reversible and regulated by proteins called writers, erasers, readers, and m6A-repelled proteins. We analysed 33 of these epitranscriptomic regulators in rat hearts after cardioprotective 3-day fasting using RT-qPCR, Western blot, and targeted proteomic analysis. We found that the most of these regulators were changed on mRNA or protein levels in fasting hearts, including up-regulation of both demethylases - FTO and ALKBH5. In accordance, decreased methylation (m6A+m6Am) levels were detected in cardiac total RNA after fasting. We also identified altered methylation levels in Nox4 and Hdac1 transcripts, both of which play a role in the cytoprotective action of ketone bodies produced during fasting. Furthermore, we investigated the impact of inhibiting demethylases ALKBH5 and FTO in adult rat primary cardiomyocytes (AVCMs). Our findings indicate that inhibiting these demethylases reduced the hypoxic tolerance of AVCMs isolated from fasting rats. This study showed that the complex epitranscriptomic machinery around m6A and m6Am modifications is regulated in the fasting hearts and might play an important role in cardiac adaptation to fasting, a well-known cardioprotective intervention.

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空腹心脏的表转录组调控:对心脏健康的影响。
禁食等饮食干预措施可增强心脏对缺血的耐受性,而禁食与心肌基因表达的显著变化有关。改变基因表达的可能机制包括 RNA 的表观遗传修饰--表转录组学。N6-甲基腺苷(m6A)和 N6,2'-O-二甲基腺苷(m6Am)是 mRNA 中最常见的两种修饰。这些甲基化是可逆的,并由称为写入蛋白、擦除蛋白、读取蛋白和 m6A 清除蛋白的蛋白质调控。我们使用 RT-qPCR、Western 印迹和靶向蛋白质组分析方法分析了大鼠心脏在禁食 3 天后的 33 种表转录调节因子。我们发现,在禁食的心脏中,这些调节因子大多在 mRNA 或蛋白质水平上发生了变化,包括 FTO 和 ALKBH5 这两种去甲基化酶的上调。相应地,禁食后在心脏总核糖核酸中检测到甲基化(m6A+m6Am)水平下降。我们还发现 Nox4 和 Hdac1 转录本中的甲基化水平发生了变化,这两种物质在禁食期间产生的酮体的细胞保护作用中发挥作用。此外,我们还研究了抑制脱甲基酶 ALKBH5 和 FTO 对成年大鼠原代心肌细胞(AVCMs)的影响。我们的研究结果表明,抑制这些去甲基化酶会降低从禁食大鼠中分离出来的原代大鼠心肌细胞的缺氧耐受性。这项研究表明,围绕 m6A 和 m6Am 修饰的复杂表转录组机制在禁食心脏中受到调控,并可能在心脏适应禁食(一种众所周知的心脏保护干预措施)过程中发挥重要作用。
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来源期刊
RNA Biology
RNA Biology 生物-生化与分子生物学
CiteScore
8.60
自引率
0.00%
发文量
82
审稿时长
1 months
期刊介绍: RNA has played a central role in all cellular processes since the beginning of life: decoding the genome, regulating gene expression, mediating molecular interactions, catalyzing chemical reactions. RNA Biology, as a leading journal in the field, provides a platform for presenting and discussing cutting-edge RNA research. RNA Biology brings together a multidisciplinary community of scientists working in the areas of: Transcription and splicing Post-transcriptional regulation of gene expression Non-coding RNAs RNA localization Translation and catalysis by RNA Structural biology Bioinformatics RNA in disease and therapy
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