Understanding the chromosomal evolution in cuckoos (Aves, Cuculiformes): a journey through unusual rearrangements.
IF 2.3 3区 生物学Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGYGenomePub Date : 2024-06-01Epub Date: 2024-02-12DOI:10.1139/gen-2023-0101
Rafael Kretschmer, Marcelo Santos de Souza, Ricardo José Gunski, Analía Del Valle Garnero, Thales Renato Ochotorena de Freitas, Edison Zefa, Gustavo Akira Toma, Marcelo de Bello Cioffi, Edivaldo Herculano Corrêa de Oliveira, Rebecca E O'Connor, Darren K Griffin
{"title":"Understanding the chromosomal evolution in cuckoos (Aves, Cuculiformes): a journey through unusual rearrangements.","authors":"Rafael Kretschmer, Marcelo Santos de Souza, Ricardo José Gunski, Analía Del Valle Garnero, Thales Renato Ochotorena de Freitas, Edison Zefa, Gustavo Akira Toma, Marcelo de Bello Cioffi, Edivaldo Herculano Corrêa de Oliveira, Rebecca E O'Connor, Darren K Griffin","doi":"10.1139/gen-2023-0101","DOIUrl":null,"url":null,"abstract":"<p><p>The Cuculiformes are a family of over 150 species that live in a range of habitats, such as forests, savannas, and deserts. Here, bacterial artificial chromosome (BAC) probes (75 from chicken and 14 from zebra finch macrochromosomes 1-10 +ZW and for microchromosomes 11-28 (except 16)) were used to investigate chromosome homologies between chicken and the squirrel cuckoo (<i>Piaya cayana</i>). In addition, repetitive DNA probes were applied to characterize the chromosome organization and to explore the role of these sequences in the karyotype evolution of <i>P</i>. <i>cayana</i>. We also applied BAC probes for chicken chromosome 17 and Z to the guira cuckoo (<i>Guira guira</i>) to test whether this species has an unusual Robertsonian translocation between a microchromosome and the Z chromosome, recently described in the smooth-billed ani (<i>Crotophaga ani</i>). Our results revealed extensive chromosome reorganization with inter- and intrachromosomal rearrangements in <i>P</i>. <i>cayana</i>, including a conspicuous chromosome size and heterochromatin polymorphism on chromosome pair 20. Furthermore, we confirmed that the Z-autosome Robertsonian translocation found in <i>C</i>. <i>ani</i> is also found in <i>G</i>. <i>guira</i>, not <i>P</i>. <i>cayana</i>. These findings suggest that this translocation occurred prior to the divergence between <i>C</i>. <i>ani</i> and <i>G</i>. <i>guira</i>, but after the divergence with <i>P</i>. <i>cayana</i>.</p>","PeriodicalId":12809,"journal":{"name":"Genome","volume":" ","pages":"168-177"},"PeriodicalIF":2.3000,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genome","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1139/gen-2023-0101","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/2/12 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
The Cuculiformes are a family of over 150 species that live in a range of habitats, such as forests, savannas, and deserts. Here, bacterial artificial chromosome (BAC) probes (75 from chicken and 14 from zebra finch macrochromosomes 1-10 +ZW and for microchromosomes 11-28 (except 16)) were used to investigate chromosome homologies between chicken and the squirrel cuckoo (Piaya cayana). In addition, repetitive DNA probes were applied to characterize the chromosome organization and to explore the role of these sequences in the karyotype evolution of P. cayana. We also applied BAC probes for chicken chromosome 17 and Z to the guira cuckoo (Guira guira) to test whether this species has an unusual Robertsonian translocation between a microchromosome and the Z chromosome, recently described in the smooth-billed ani (Crotophaga ani). Our results revealed extensive chromosome reorganization with inter- and intrachromosomal rearrangements in P. cayana, including a conspicuous chromosome size and heterochromatin polymorphism on chromosome pair 20. Furthermore, we confirmed that the Z-autosome Robertsonian translocation found in C. ani is also found in G. guira, not P. cayana. These findings suggest that this translocation occurred prior to the divergence between C. ani and G. guira, but after the divergence with P. cayana.
鹃形目有 150 多个物种,生活在森林、热带草原和沙漠等多种栖息地。本文利用细菌人工染色体(BAC)探针(75个来自鸡,14个来自斑马雀大染色体1-10 +ZW和微染色体11-28(16除外))研究鸡和松鼠杜鹃(Piaya cayana)的染色体同源性。此外,我们还使用了重复 DNA 探针来描述染色体组织的特征,并探索这些序列在松鼠杜鹃核型进化中的作用。我们还在吉拉杜鹃(Guira guira)中应用了鸡第17号染色体和Z染色体的BAC探针,以检验该物种是否存在微染色体与Z染色体之间不寻常的罗伯逊易位(最近在平嘴杜鹃(Crotophaga ani)中描述过)。我们的研究结果表明,P. cayana 的染色体在染色体间和染色体内发生了广泛的重组,包括第 20 对染色体上明显的染色体大小和异染色质多态性。此外,我们证实在 C. ani 中发现的 Z 自体罗伯逊易位也存在于 G. guira 中,而不是 P. cayana 中。这些发现表明,这种易位发生在 C. ani 与 G. guira 的分化之前,而在与 P. cayana 的分化之后。
期刊介绍:
Genome is a monthly journal, established in 1959, that publishes original research articles, reviews, mini-reviews, current opinions, and commentaries. Areas of interest include general genetics and genomics, cytogenetics, molecular and evolutionary genetics, developmental genetics, population genetics, phylogenomics, molecular identification, as well as emerging areas such as ecological, comparative, and functional genomics.