Biophysical and structural characterization of tetramethrin serum protein complex and its toxicological implications

IF 2.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Recognition Pub Date : 2024-02-17 DOI:10.1002/jmr.3076
Pratik Singh, Priyanka Gopi, Majji Sai Sudha Rani, Shweta Singh, Prateek Pandya
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Abstract

Tetramethrin (TMT) is a commonly used insecticide and has a carcinogenic and neurodegenerative effect on humans. The binding mechanism and toxicological implications of TMT to human serum albumin (HSA) were examined in this study employing a combination of biophysical and computational methods indicating moderate binding affinity and potential hepato and renal toxicity. Fluorescence quenching experiments showed that TMT binds to HSA with a moderate affinity, and the binding process was spontaneous and predominantly enthalpy-driven. Circular dichroism spectroscopy revealed that TMT binding did not induce any significant conformational changes in HSA, resulting in no changes in its alpha-helix content. The binding site and modalities of TMT interactions with HSA as computed by molecular docking and molecular dynamics simulations revealed that it binds to Sudlow site II of HSA via hydrophobic interactions through its dimethylcyclopropane carboxylate methyl propanyl group. The structural dynamics of TMT induce proper fit into the binding site creating increased and stabilizing interactions. Additionally, molecular mechanics–Poisson Boltzmann surface area calculations also indicated that non-polar and van der Waals were found to be the major contributors to the high binding free energy of the complex. Quantum mechanics (QM) revealed the conformational energies of the binding confirmation and the degree of deviation from the global minimum energy conformation of TMT. The results of this study provide a comprehensive understanding of the binding mechanism of TMT with HSA, which is important for evaluating the toxicity of this insecticide in humans.

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四氯菊酯血清蛋白复合物的生物物理和结构特征及其毒理学意义。
四氯菊酯(TMT)是一种常用的杀虫剂,对人体有致癌和神经退行性作用。本研究结合生物物理和计算方法,对 TMT 与人血清白蛋白(HSA)的结合机制和毒理学影响进行了研究,结果表明其结合亲和力适中,具有潜在的肝脏和肾脏毒性。荧光淬灭实验表明,TMT 与 HSA 的结合亲和力适中,结合过程是自发的,主要由焓驱动。圆二色性光谱显示,TMT 的结合并没有引起 HSA 发生任何明显的构象变化,导致其α-螺旋含量没有变化。通过分子对接和分子动力学模拟计算出的 TMT 与 HSA 的结合位点和相互作用方式表明,它是通过其二甲基环丙烷羧酸甲基丙基与 HSA 的 Sudlow 位点 II 通过疏水相互作用结合的。TMT 的结构动力学可诱导与结合位点的适当贴合,从而增加和稳定相互作用。此外,分子力学-泊松-玻尔兹曼表面积计算也表明,非极性和范德华是导致复合物结合自由能高的主要原因。量子力学(QM)揭示了结合确认的构象能以及与 TMT 全局最小能构象的偏离程度。这项研究的结果使人们对 TMT 与 HSA 的结合机制有了全面的了解,这对于评估这种杀虫剂对人体的毒性非常重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Recognition
Journal of Molecular Recognition 生物-生化与分子生物学
CiteScore
4.60
自引率
3.70%
发文量
68
审稿时长
2.7 months
期刊介绍: Journal of Molecular Recognition (JMR) publishes original research papers and reviews describing substantial advances in our understanding of molecular recognition phenomena in life sciences, covering all aspects from biochemistry, molecular biology, medicine, and biophysics. The research may employ experimental, theoretical and/or computational approaches. The focus of the journal is on recognition phenomena involving biomolecules and their biological / biochemical partners rather than on the recognition of metal ions or inorganic compounds. Molecular recognition involves non-covalent specific interactions between two or more biological molecules, molecular aggregates, cellular modules or organelles, as exemplified by receptor-ligand, antigen-antibody, nucleic acid-protein, sugar-lectin, to mention just a few of the possible interactions. The journal invites manuscripts that aim to achieve a complete description of molecular recognition mechanisms between well-characterized biomolecules in terms of structure, dynamics and biological activity. Such studies may help the future development of new drugs and vaccines, although the experimental testing of new drugs and vaccines falls outside the scope of the journal. Manuscripts that describe the application of standard approaches and techniques to design or model new molecular entities or to describe interactions between biomolecules, but do not provide new insights into molecular recognition processes will not be considered. Similarly, manuscripts involving biomolecules uncharacterized at the sequence level (e.g. calf thymus DNA) will not be considered.
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