Structural determination and modeling of ciliary microtubules.

IF 2.6 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Acta Crystallographica. Section D, Structural Biology Pub Date : 2024-04-01 Epub Date: 2024-03-07 DOI:10.1107/S2059798324001815
Travis Walton, Matthew H Doran, Alan Brown
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Abstract

The axoneme, a microtubule-based array at the center of every cilium, has been the subject of structural investigations for decades, but only recent advances in cryo-EM and cryo-ET have allowed a molecular-level interpretation of the entire complex to be achieved. The unique properties of the nine doublet microtubules and central pair of singlet microtubules that form the axoneme, including the highly decorated tubulin lattice and the docking of massive axonemal complexes, provide opportunities and challenges for sample preparation, 3D reconstruction and atomic modeling. Here, the approaches used for cryo-EM and cryo-ET of axonemes are reviewed, while highlighting the unique opportunities provided by the latest generation of AI-guided tools that are transforming structural biology.

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纤毛微管的结构测定和建模。
轴丝是位于每个纤毛中心的基于微管的阵列,几十年来一直是结构研究的主题,但只有最近在低温电子显微镜和低温电子显微镜方面取得了进展,才能对整个复合体进行分子水平的解读。构成轴丝的九条双微管和中心一对单微管具有独特的性质,包括高度装饰的微管蛋白晶格和大量轴丝复合物的对接,这为样品制备、三维重建和原子建模提供了机遇和挑战。本文回顾了轴丝的低温电子显微镜(cryo-EM)和低温电子显微镜(cryo-ET)所用的方法,同时强调了正在改变结构生物学的最新一代人工智能指导工具所提供的独特机遇。
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来源期刊
Acta Crystallographica. Section D, Structural Biology
Acta Crystallographica. Section D, Structural Biology BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
4.50
自引率
13.60%
发文量
216
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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Reconsideration of the P-clusters in VFe proteins using the bond-valence method: towards their electron transfer and protonation. Making the most of an abundance of data. AlphaFold-guided molecular replacement for solving challenging crystal structures. Useful experimental aspects of small-wedge synchrotron crystallography for accurate structure analysis of protein molecules. Peter Main (1939-2024).
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