VitroJet: new features and case studies.

IF 2.6 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Acta Crystallographica. Section D, Structural Biology Pub Date : 2024-04-01 Epub Date: 2024-03-15 DOI:10.1107/S2059798324001852
Rene J M Henderikx, Daniel Mann, Aušra Domanska, Jing Dong, Saba Shahzad, Behnam Lak, Aikaterini Filopoulou, Damian Ludig, Martin Grininger, Jeffrey Momoh, Elina Laanto, Hanna M Oksanen, Kyrylo Bisikalo, Pamela A Williams, Sarah J Butcher, Peter J Peters, Bart W A M M Beulen
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Abstract

Single-particle cryo-electron microscopy has become a widely adopted method in structural biology due to many recent technological advances in microscopes, detectors and image processing. Before being able to inspect a biological sample in an electron microscope, it needs to be deposited in a thin layer on a grid and rapidly frozen. The VitroJet was designed with this aim, as well as avoiding the delicate manual handling and transfer steps that occur during the conventional grid-preparation process. Since its creation, numerous technical developments have resulted in a device that is now widely utilized in multiple laboratories worldwide. It features plasma treatment, low-volume sample deposition through pin printing, optical ice-thickness measurement and cryofixation of pre-clipped Autogrids through jet vitrification. This paper presents recent technical improvements to the VitroJet and the benefits that it brings to the cryo-EM workflow. A wide variety of applications are shown: membrane proteins, nucleosomes, fatty-acid synthase, Tobacco mosaic virus, lipid nanoparticles, tick-borne encephalitis viruses and bacteriophages. These case studies illustrate the advancement of the VitroJet into an instrument that enables accurate control and reproducibility, demonstrating its suitability for time-efficient cryo-EM structure determination.

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VitroJet:新功能和案例研究。
由于显微镜、探测器和图像处理技术的不断进步,单粒子冷冻电子显微镜已成为结构生物学领域广泛采用的一种方法。在使用电子显微镜检测生物样本之前,需要将其薄薄地沉积在网格上并快速冷冻。VitroJet 就是为此而设计的,它还避免了传统网格制备过程中的精细手工操作和转移步骤。该设备自问世以来,经过多次技术改进,现已在全球多个实验室广泛使用。它的特点包括等离子体处理、通过针式打印实现低量样品沉积、光学冰厚测量以及通过喷射玻璃化实现预夹层 Autogrid 的低温固定。本文介绍了 VitroJet 的最新技术改进及其为冷冻电镜工作流程带来的好处。文中展示了多种应用:膜蛋白、核糖体、脂肪酸合成酶、烟草花叶病毒、脂质纳米颗粒、蜱传脑炎病毒和噬菌体。这些案例研究表明,VitroJet 已经发展成为一种能够实现精确控制和可重复性的仪器,证明了它适用于时间效率高的冷冻电镜结构测定。
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来源期刊
Acta Crystallographica. Section D, Structural Biology
Acta Crystallographica. Section D, Structural Biology BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
4.50
自引率
13.60%
发文量
216
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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