Network pharmacology-based prediction of efficacy and mechanism of Myrrha acting on Allergic Rhinitis

Yebin Lim, Bitna Kweon, Dong-Uk Kim, Gi-Sang Bae
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Abstract

Objectives: Network pharmacology is an analysis method that explores drug-centered efficacy and mechanism by constructing a compound-target-disease network based on system biology, and is attracting attention as a methodology for studying herbal medicine that has the characteristics for multi-compound therapeutics. Thus, we investigated the potential functions and pathways of Myrrha on Allergic Rhinitis (AR) via network pharmacology analysis and molecular docking.Methods: Using public databases and PubChem database, compounds of Myrrha and their target genes were collected. The putative target genes of Myrrha and known target genes of AR were compared and found the correlation. Then, the network was constructed using STRING database, and functional enrichment analysis was conducted based on the Gene Ontology (GO) Biological process and Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathways. Binding-Docking stimulation was performed using CB-Dock.Results: The result showed that total 3 compounds and 55 related genes were gathered from Myrrha. 33 genes were interacted with AR gene set, suggesting that the effects of Myrrha are closely related to AR. Target genes of Myrrha are considerably associated with various pathways including ‘Fc epsilon RI signaling pathway’ and ‘JAK-STAT signaling pathway’. As a result of blinding docking, AKT1, which is involved in both mechanisms, had high binding energies for abietic acid and dehydroabietic acid, which are components of Myrrha.Conclusion: Through a network pharmacological method, Myrrha was predicted to have high relevance with AR by regulating AKT1. This study could be used as a basis for studying therapeutic effects of Myrrha on AR.
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基于网络药理学预测米尔哈对过敏性鼻炎的疗效和作用机制
目的:网络药理学是以系统生物学为基础,通过构建化合物-靶点-疾病网络,探索以药物为中心的药效和机制的一种分析方法,作为一种研究具有多化合物治疗特点的中药的方法而备受关注。因此,我们通过网络药理学分析和分子对接研究了香紫苏对过敏性鼻炎(AR)的潜在功能和作用途径:方法:利用公共数据库和PubChem数据库,收集桃金娘的化合物及其靶基因。方法:利用公共数据库和 Pubhem 数据库收集欧鼠李糖化合物及其靶基因,将欧鼠李糖的推定靶基因与已知的 AR 靶基因进行比较,发现两者之间存在相关性。然后,利用 STRING 数据库构建了网络,并根据基因本体(GO)生物过程和京都基因组百科全书(KEGG)通路进行了功能富集分析。使用 CB-Dock 进行了结合对接刺激:结果表明,从 Myrrha 中共收集到 3 种化合物和 55 个相关基因。33个基因与AR基因组有相互作用,这表明Myrrha的作用与AR密切相关。Myrrha的靶基因与 "Fc epsilon RI信号通路 "和 "JAK-STAT信号通路 "等多种通路密切相关。盲法对接的结果表明,参与这两种机制的 AKT1 与阿比替酸和脱氢松香酸的结合能量很高:结论:通过网络药理学方法,预测了米尔哈通过调节 AKT1 与 AR 的高度相关性。结论:通过网络药理学方法,预测了Myrrha通过调节AKT1与AR的高度相关性,该研究可作为研究Myrrha对AR的治疗作用的基础。
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