The generic temperature response of large biochemical networks

Julian B. VoitsHeidelberg University, Ulrich S. SchwarzHeidelberg University
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Abstract

Biological systems are remarkably susceptible to relatively small temperature changes. The most obvious example is fever, when a modest rise in body temperature of only few Kelvin has strong effects on our immune system and how it fights pathogens. Another very important example is climate change, when even smaller temperature changes lead to dramatic shifts in ecosystems. Although it is generally accepted that the main effect of an increase in temperature is the acceleration of biochemical reactions according to the Arrhenius equation, it is not clear how it effects large biochemical networks with complicated architectures. For developmental systems like fly and frog, it has been shown that the system response to temperature deviates in a characteristic manner from the linear Arrhenius plot of single reactions, but a rigorous explanation has not been given yet. Here we use a graph theoretical interpretation of the mean first passage times of a biochemical master equation to give a statistical description. We find that in the limit of large system size and if the network has a bias towards a target state, then the Arrhenius plot is generically quadratic, in excellent agreement with experimental data for developmental times in fly and frog.
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大型生化网络的一般温度响应
生物系统非常容易受到相对较小的温度变化的影响。最明显的例子就是发烧,体温仅升高几开尔文,就会对我们的免疫系统和抵抗病原体的方式产生强烈影响。另一个非常重要的例子是气候变化,即使较小的温度变化也会导致生态系统的剧烈变化。虽然人们普遍认为,根据阿伦尼乌斯方程,温度升高的主要影响是加速生化反应,但目前还不清楚它如何影响具有复杂结构的大型生化网络。对于蝇类和蛙类等发育系统,已有研究表明,系统对温度的反应与单一反应的线性阿伦尼乌斯曲线图有特征性的偏离,但尚未给出有力的解释。在这里,我们利用图论解释了生化总方程的平均首次通过时间,并给出了统计描述。我们发现,在系统规模较大的情况下,如果网络偏向于目标状态,那么阿伦尼乌斯图一般为二次曲线,这与苍蝇和青蛙发育时间的实验数据非常吻合。
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