A multi-cell model for the C4 photosynthetic pathway in developing wheat grains based upon tissue-specific transcriptome data

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS ACS Applied Bio Materials Pub Date : 2024-03-29 DOI:10.1016/j.biosystems.2024.105195
Parimalan Rangan , Agnelo Furtado , Viswanathan Chinnusamy , Robert Henry
{"title":"A multi-cell model for the C4 photosynthetic pathway in developing wheat grains based upon tissue-specific transcriptome data","authors":"Parimalan Rangan ,&nbsp;Agnelo Furtado ,&nbsp;Viswanathan Chinnusamy ,&nbsp;Robert Henry","doi":"10.1016/j.biosystems.2024.105195","DOIUrl":null,"url":null,"abstract":"<div><p>A non-Kranz C<sub>4</sub> photosynthesis of the NAD-ME subtype, specifically in developing wheat grains (14 dpa, days post-anthesis) was originally demonstrated using transcriptome-based RNA-seq. Here we present a re-examination of evidence for C<sub>4</sub> photosynthesis in the developing grains of wheat and, more broadly, the Pooideae and an investigation of the evolutionary processes and implications. The expression profiles for the genes associated with C<sub>4</sub> photosynthesis (C<sub>4</sub>- and C<sub>3</sub>-specific) were evaluated using published transcriptome data for the outer pericarp, inner pericarp, and endosperm tissues of the developing wheat grains. The expression of the C<sub>4</sub>-specific genes across these three tissues revealed the involvement of all three tissues in an orderly fashion to accomplish the non-Kranz NAD-ME-dependent C<sub>4</sub> photosynthesis. Based on their expression levels in RPKM (reads per kilobase per million mapped reads) values, a model involving multiple cell- and tissue-types is proposed for C<sub>4</sub> photosynthesis involved in the refixation of the respired CO<sub>2</sub> from the endosperm tissues in the developing wheat grains. This multi-cell C<sub>4</sub> model, proposed to involve more than two cell types, requires further biochemical validation.</p></div>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-03-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0303264724000807","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 0

Abstract

A non-Kranz C4 photosynthesis of the NAD-ME subtype, specifically in developing wheat grains (14 dpa, days post-anthesis) was originally demonstrated using transcriptome-based RNA-seq. Here we present a re-examination of evidence for C4 photosynthesis in the developing grains of wheat and, more broadly, the Pooideae and an investigation of the evolutionary processes and implications. The expression profiles for the genes associated with C4 photosynthesis (C4- and C3-specific) were evaluated using published transcriptome data for the outer pericarp, inner pericarp, and endosperm tissues of the developing wheat grains. The expression of the C4-specific genes across these three tissues revealed the involvement of all three tissues in an orderly fashion to accomplish the non-Kranz NAD-ME-dependent C4 photosynthesis. Based on their expression levels in RPKM (reads per kilobase per million mapped reads) values, a model involving multiple cell- and tissue-types is proposed for C4 photosynthesis involved in the refixation of the respired CO2 from the endosperm tissues in the developing wheat grains. This multi-cell C4 model, proposed to involve more than two cell types, requires further biochemical validation.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
基于组织特异性转录组数据的发育中麦粒的 C4 光合途径多细胞模型
最初是利用基于转录组的 RNA-seq 技术证明了 NAD-ME 亚型的非克兰兹 C4 光合作用,特别是在发育中的小麦粒中(14 dpa,开花后几天)。在此,我们重新研究了小麦以及更广泛意义上的普氏植物发育中谷粒的 C4 光合作用证据,并对其进化过程和影响进行了调查。利用已发表的转录组数据,对发育中麦粒的外果皮、内果皮和胚乳组织中与 C4 光合作用相关的基因(C4 特异基因和 C3 特异基因)的表达谱进行了评估。C4 特异基因在这三种组织中的表达表明,所有三种组织都以有序的方式参与完成了非克兰兹 NAD-ME 依赖性 C4 光合作用。根据这些基因在 RPKM(每百万映射读数中每千个碱基的读数)值中的表达水平,提出了一个涉及多种细胞和组织类型的 C4 光合作用模型,该模型参与了发育中麦粒中胚乳组织呼吸的 CO2 的再固定。这种多细胞 C4 模型涉及两种以上的细胞类型,需要进一步的生化验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
期刊最新文献
A Systematic Review of Sleep Disturbance in Idiopathic Intracranial Hypertension. Advancing Patient Education in Idiopathic Intracranial Hypertension: The Promise of Large Language Models. Anti-Myelin-Associated Glycoprotein Neuropathy: Recent Developments. Approach to Managing the Initial Presentation of Multiple Sclerosis: A Worldwide Practice Survey. Association Between LACE+ Index Risk Category and 90-Day Mortality After Stroke.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1