Genome analysis of Rossellomorea sp. y25, a deep sea bacterium isolated from the sediments of South China Sea

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Marine genomics Pub Date : 2024-04-26 DOI:10.1016/j.margen.2024.101110
Shijie Bai , Zhaosong Huang , Xue-Gong Li
{"title":"Genome analysis of Rossellomorea sp. y25, a deep sea bacterium isolated from the sediments of South China Sea","authors":"Shijie Bai ,&nbsp;Zhaosong Huang ,&nbsp;Xue-Gong Li","doi":"10.1016/j.margen.2024.101110","DOIUrl":null,"url":null,"abstract":"<div><p><em>Rossellomorea</em> sp. y25, a putative new species of yellow pigment-producing, aerobic and chemoheterotrophic bacterium belonging to the family <em>Bacillaceae</em>, was isolated from the sediments at the depth of 1829 m in the South China Sea. In this study, we present the complete genome sequences of strain y25, which consisted of only one circular chromosome with 4,633,006 bp and the content of G + C was 41.76%. A total of 4466 CDSs, 106 tRNA, 33 rRNA, and 101 sRNA genes were obtained. Genomic analysis of strain y25 showed that it has the ability to produce antioxidant carotenoids and a large number of heavy metal resistance genes, such as arsenic, cadmium and zinc. In addition, strain y25 contains a prophage that may contribute to host protection against lysis by related <em>Bacillus</em>-like phages. This is the first report of genome-wide information on a bacterium of the genus <em>Rossellomorea</em> isolated from the deep sea, providing insights into how microorganisms of this genus adapt to deep-sea environments.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":"75 ","pages":"Article 101110"},"PeriodicalIF":1.3000,"publicationDate":"2024-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Marine genomics","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S187477872400028X","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

Abstract

Rossellomorea sp. y25, a putative new species of yellow pigment-producing, aerobic and chemoheterotrophic bacterium belonging to the family Bacillaceae, was isolated from the sediments at the depth of 1829 m in the South China Sea. In this study, we present the complete genome sequences of strain y25, which consisted of only one circular chromosome with 4,633,006 bp and the content of G + C was 41.76%. A total of 4466 CDSs, 106 tRNA, 33 rRNA, and 101 sRNA genes were obtained. Genomic analysis of strain y25 showed that it has the ability to produce antioxidant carotenoids and a large number of heavy metal resistance genes, such as arsenic, cadmium and zinc. In addition, strain y25 contains a prophage that may contribute to host protection against lysis by related Bacillus-like phages. This is the first report of genome-wide information on a bacterium of the genus Rossellomorea isolated from the deep sea, providing insights into how microorganisms of this genus adapt to deep-sea environments.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
从中国南海沉积物中分离出的深海细菌 Rossellomorea sp.
Rossellomorea sp.y25是从中国南海1829米深处的沉积物中分离到的一种产黄色素、需氧和化学半营养细菌,属于芽孢杆菌科。该菌株只有一个环状染色体,共有 4,633,006 bp,G+C 含量为 41.76%。共获得 4466 个 CDS、106 个 tRNA、33 个 rRNA 和 101 个 sRNA 基因。菌株 y25 的基因组分析表明,它具有产生抗氧化类胡萝卜素的能力和大量抗砷、镉、锌等重金属基因。此外,菌株 y25 还含有一种噬菌体,可能有助于保护宿主免受相关类芽孢杆菌噬菌体的溶解。这是首次报道从深海中分离出的 Rossellomorea 属细菌的全基因组信息,有助于了解该属微生物如何适应深海环境。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
期刊最新文献
Complete genome sequence of the marine mangrove fungus Sarcopodium sp.QM3–1 confirmed its high potential for antimicrobial activity Genomic analysis of Vreelandella sp. F11 reveals its role in alginate utilization The complete genome sequence of Stenotrophomonas sp. P2112 for genome mining of polyvinyl chloride degrading enzymes A glimpse of microbial potential in metal metabolism in the Clarion-Clipperton Fracture Zone in the eastern Pacific Ocean based on metagenomic analysis Genomic analysis of Pseudoalteromonas sp. M58 reveals its role in chitin biodegradation
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1