Leveraging index compression techniques to optimize the use of co-processors

IF 17.7 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-04-22 DOI:10.24215/16666038.24.e01
Manuel Freire, Raúl Marichal, Agustin Martinez, Daniel Padron, E. Dufrechou, P. Ezzatti
{"title":"Leveraging index compression techniques to optimize the use of co-processors","authors":"Manuel Freire, Raúl Marichal, Agustin Martinez, Daniel Padron, E. Dufrechou, P. Ezzatti","doi":"10.24215/16666038.24.e01","DOIUrl":null,"url":null,"abstract":"\n \n \nThe significant presence that many-core devices like GPUs have these days, and their enormous computational power, motivates the study of sparse matrix operations in this hardware. The essential sparse kernels in scientific computing, such as the sparse matrix-vector multiplication (SpMV), usually have many different high-performance GPU implementations. Sparse matrix problems typically imply memory-bound operations, and this characteristic is particularly limiting in massively parallel processors. This work revisits the main ideas about reducing the volume of data required by sparse storage formats and advances in understanding some compression techniques. In particular, we study the use of index compression combined with sparse matrix reordering techniques in CSR and explore other approaches using a blocked format. The systematic experimental evaluation on a large set of real-world matrices confirms that this approach achieves meaningful data storage reductions. Additionally, we find promising results of the impact of the storage reduction on the execution time when using accelerators to perform the mathematical kernels. \n \n \n","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":"38 26","pages":""},"PeriodicalIF":17.7000,"publicationDate":"2024-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"94","ListUrlMain":"https://doi.org/10.24215/16666038.24.e01","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

Abstract

The significant presence that many-core devices like GPUs have these days, and their enormous computational power, motivates the study of sparse matrix operations in this hardware. The essential sparse kernels in scientific computing, such as the sparse matrix-vector multiplication (SpMV), usually have many different high-performance GPU implementations. Sparse matrix problems typically imply memory-bound operations, and this characteristic is particularly limiting in massively parallel processors. This work revisits the main ideas about reducing the volume of data required by sparse storage formats and advances in understanding some compression techniques. In particular, we study the use of index compression combined with sparse matrix reordering techniques in CSR and explore other approaches using a blocked format. The systematic experimental evaluation on a large set of real-world matrices confirms that this approach achieves meaningful data storage reductions. Additionally, we find promising results of the impact of the storage reduction on the execution time when using accelerators to perform the mathematical kernels.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
利用索引压缩技术优化协处理器的使用
如今,多核设备(如 GPU)的出现及其巨大的计算能力促使人们开始研究这种硬件中的稀疏矩阵运算。科学计算中必不可少的稀疏内核,如稀疏矩阵向量乘法(SpMV),通常有许多不同的高性能 GPU 实现。稀疏矩阵问题通常意味着内存绑定操作,而这一特性在大规模并行处理器中尤其具有局限性。这项研究重新审视了有关减少稀疏存储格式所需数据量的主要观点,并进一步了解了一些压缩技术。特别是,我们研究了 CSR 中结合稀疏矩阵重排序技术的索引压缩使用方法,并探索了使用阻塞格式的其他方法。在大量实际矩阵上进行的系统实验评估证实,这种方法能有效减少数据存储量。此外,我们还发现,在使用加速器执行数学内核时,存储量的减少对执行时间的影响很有希望。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
期刊最新文献
Corrigendum to "Do All Isolated Traumatic Subarachnoid Hemorrhages Need to Be Transferred to a Level 1 Trauma Center?" Issue Editorial Masthead Issue Publication Information Brightening Upconversion Nanoparticles Tetrapyrrole Complexes with Unusual Geometries: a Main Group Element Perspective
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1