Interaction between hydroxymethanesulfonic acid and several organic compounds and its atmospheric significance

IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Journal of molecular graphics & modelling Pub Date : 2024-04-26 DOI:10.1016/j.jmgm.2024.108782
Dong-Ping Chen , Wen Ma , Chun-Hong Yang, Ming Li, Zhao-Zhen Zhou, Yang Zhang, Zheng-Jun Quan
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Abstract

The interactions of the micro-mechanism of hydroxymethanesulfonic acid (HMSA) with the typical small organic molecule in atmospheric (X = methanol, formaldehyde, formic acid, methyl formate, dimethyl ether, acetone) has been investigated by density functional theory (DFT), quantum theory of atoms in molecules (QTAIM), Generalized Kohn-Sham Enery Decomposition Analysis (GKS−EDA) and the atmospheric clusters dynamic code (ACDC). The results of DFT show that the stable six− to eight−membered ring structures are easily formed in HMSA−X clusters. According to the topological analysis results of the AIM theory and the IRI method, a strong hydrogen bonding interaction is present in the complex. GKS−EDA results show that electrostatic energy is the main contributor to the interaction energy as it accounts for 51 %–55 % of the total attraction energy. The evaporation rates of HMSA−HMSA and HMSA−HCOOH clusters were much lower than those of the other HMSA complexes. In addition, the Gibbs energy of formation (ΔG) of HMSA−X dimers is investigated under atmosphere temperature T = 217–298 K and p = 0.19–1.0 atm, the ΔG decreased with decreasing of the atmosphere temperature and increased with the decrease of atmospheric pressure, indicating that the low temperature and high pressure may significantly facilitate to the formation of dimers.

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羟甲基磺酸与几种有机化合物的相互作用及其对大气的意义
通过密度泛函理论(DFT)、分子中原子量子理论(QTAIM)、广义 Kohn-Sham Enery 分解分析(GKS-EDA)和大气簇动态代码(ACDC)研究了羟甲基磺酸(HMSA)与大气中典型有机小分子(X = 甲醇、甲醛、甲酸、甲酸甲酯、二甲醚、丙酮)的相互作用微观机制。DFT 结果表明,在 HMSA-X 簇中很容易形成稳定的六到八元环结构。根据 AIM 理论和 IRI 方法的拓扑分析结果,复合物中存在很强的氢键相互作用。GKS-EDA 结果表明,静电能是相互作用能的主要贡献者,占总吸引能的 51 %-55 %。HMSA-HMSA 和 HMSA-HCOOH 团簇的蒸发率远远低于其他 HMSA 复合物。此外,在大气温度 T = 217-298 K 和大气压 p = 0.19-1.0 的条件下,研究了 HMSA-X 二聚体形成的吉布斯能(ΔG)。
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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