An Exhaustive Structural Scrutiny and Initial Functional Appraisal of the Yak SLC11A1 Gene

IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Russian Journal of Genetics Pub Date : 2024-05-03 DOI:10.1134/s102279542404015x
L. Wang, B. Wang, Z. Gao, Y. Lu, W. Deng, D. Xi, Y. Chong
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Abstract

Animal diseases pose significant impediments to the flourishing of the animal husbandry sector, due to the role of solute transport protein family 11A1 (SLC11A1) gene on resistance or susceptibility to bacterial infections, rendering it a promising candidate gene for breeding disease-resistant animals. Here, we successfully cloned the coding region of the yak SLC11A1 gene. Comparative analysis against wild yaks and yellow cattle revealed the presence of 3 and 13 base variations, respectively. The N-terminal segment of the yak SLC11A1 gene’s coding region was expressed in a prokaryotic system, the protein exhibited inhibitory activity against Escherichia coli, a pathogen responsible for calf diarrhea. Furthermore, we successfully amplified a gene sequence encompassing a total length of 10 306 bp, and revealing the presence of 15 exons and 14 introns. Within the entire sequence, 14 SNPs were detected, and gave rise to 13 haplotypes. Furthermore, comparative analysis against cattle sequences (KR002419) unveiled two deletion sites, namely g.4511delACCCCACC and g.6410delCAGGT. This comprehensive examination provides insight into the structural attributes of both the coding region and the entire gene sequence, alongside an initial functional evaluation. It lays the foundation for the prospective utilization of the yak SLC11A1 gene as a molecular marker for disease resistance traits.

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牦牛 SLC11A1 基因的详尽结构审查和初步功能评估
摘要 动物疾病严重阻碍了畜牧业的发展,这是因为溶质转运蛋白家族 11A1 (SLC11A1)基因对细菌感染的抵抗力或易感性起着重要作用,使其成为有望培育抗病动物的候选基因。在此,我们成功克隆了牦牛 SLC11A1 基因的编码区。通过与野牦牛和黄牛的比较分析发现,这两个基因分别存在 3 个和 13 个碱基变异。牦牛SLC11A1基因编码区的N端片段在原核系统中表达,该蛋白对导致犊牛腹泻的病原体大肠杆菌具有抑制活性。此外,我们还成功扩增了一个总长度为 10 306 bp 的基因序列,发现其中有 15 个外显子和 14 个内含子。在整个序列中,我们检测到了 14 个 SNPs,并产生了 13 个单倍型。此外,与牛序列(KR002419)的比较分析还发现了两个缺失位点,即 g.4511delACCCCACC 和 g.6410delCAGGT。这项全面的研究深入了解了编码区和整个基因序列的结构属性,并进行了初步的功能评估。它为将来利用牦牛 SLC11A1 基因作为抗病性性状的分子标记奠定了基础。
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来源期刊
Russian Journal of Genetics
Russian Journal of Genetics 生物-遗传学
CiteScore
1.00
自引率
33.30%
发文量
126
审稿时长
1 months
期刊介绍: Russian Journal of Genetics is a journal intended to make significant contribution to the development of genetics. The journal publishes reviews and experimental papers in the areas of theoretical and applied genetics. It presents fundamental research on genetic processes at molecular, cell, organism, and population levels, including problems of the conservation and rational management of genetic resources and the functional genomics, evolutionary genomics and medical genetics.
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