Exploring the molecular mechanism of Epimedium for the treatment of ankylosing spondylitis based on network pharmacology, molecular docking, and molecular dynamics simulations.

IF 3.9 2区 化学 Q2 CHEMISTRY, APPLIED Molecular Diversity Pub Date : 2025-02-01 Epub Date: 2024-05-11 DOI:10.1007/s11030-024-10877-x
Xiangjin Wang, Lijiao Wu, Maobin Yu, Hao Wang, Langyu He, Yilang Hu, Zhaosen Li, Yuqin Zheng, Bo Peng
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Abstract

Ankylosing spondylitis (AS) is a rheumatic disease that causes inflammation and bone formation in the spine. Despite significant advances in treatment, adverse side effects have triggered research into natural compounds. Epimedium (EP) is a traditional Chinese herb with a variety of pharmacological activities, including antirheumatic, anti-inflammatory, and immunomodulatory activities; however, its direct effects on AS treatment and the underlying molecular mechanisms have not been systematically studied. Thus, here, we used network pharmacology, molecular docking, and molecular dynamics simulations to explore the targets of EP for treating AS. We constructed an interaction network to elucidate the complex relationship between EP and AS. Sixteen active ingredients in EP were screened; 80 potential targets were identified. In particular, 8-(3-methylbut-2-enyl)-2-phenylchromone, anhydroicaritin, and luteolin were the core components and TNF, IL-6, IL-1β, MMP9, and PTGS2 were the core targets. The GO and KEGG analyses indicated that EP may modulate multiple biological processes and pathways, including the AGE-RAGE, TNF, NF-κB/MAPK, and TLR signaling pathways, for AS treatment. Molecular docking and molecular dynamics simulations showed good affinity between the active components and core targets of EP, with stable binding within 100 nanoseconds. In particular, 8-(3-methylbut-2-enyl)-2-phenylchromone possessed the highest free energy of binding to PTGS2 and TNF (-115.575 and - 87.676 kcal/mol, respectively). Thus, EP may affect AS through multiple pathways, including the alleviation of inflammation, oxidative stress, and immune responses. In summary, we identified the active components and potential targets of EP, highlighting new strategies for the further experimental validation and exploration of lead compounds for treating AS.

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基于网络药理学、分子对接和分子动力学模拟,探索淫羊藿治疗强直性脊柱炎的分子机制。
强直性脊柱炎(AS)是一种风湿性疾病,会导致脊柱发炎和骨形成。尽管在治疗方面取得了重大进展,但不良副作用引发了对天然化合物的研究。淫羊藿(EP)是一种传统中草药,具有多种药理活性,包括抗风湿、抗炎和免疫调节活性;然而,其对强直性脊柱炎治疗的直接影响及其潜在的分子机制尚未得到系统研究。因此,我们利用网络药理学、分子对接和分子动力学模拟来探索 EP 治疗强直性脊柱炎的靶点。我们构建了一个相互作用网络,以阐明 EP 与 AS 之间的复杂关系。我们筛选了 EP 中的 16 种活性成分,并确定了 80 个潜在靶点。其中,8-(3-甲基丁-2-烯基)-2-苯基色酮、脱水杨梅素和叶黄素是核心成分,TNF、IL-6、IL-1β、MMP9和PTGS2是核心靶标。GO和KEGG分析表明,EP可调节多种生物过程和通路,包括AGE-RAGE、TNF、NF-κB/MAPK和TLR信号通路,从而治疗强直性脊柱炎。分子对接和分子动力学模拟显示,活性成分与 EP 核心靶点之间具有良好的亲和力,可在 100 纳秒内稳定结合。其中,8-(3-甲基丁-2-烯基)-2-苯基色酮与PTGS2和TNF的结合自由能最高(分别为-115.575和-87.676 kcal/mol)。因此,EP 可能通过多种途径影响 AS,包括减轻炎症、氧化应激和免疫反应。总之,我们确定了 EP 的活性成分和潜在靶点,为进一步实验验证和探索治疗强直性脊柱炎的先导化合物提供了新策略。
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来源期刊
Molecular Diversity
Molecular Diversity 化学-化学综合
CiteScore
7.30
自引率
7.90%
发文量
219
审稿时长
2.7 months
期刊介绍: Molecular Diversity is a new publication forum for the rapid publication of refereed papers dedicated to describing the development, application and theory of molecular diversity and combinatorial chemistry in basic and applied research and drug discovery. The journal publishes both short and full papers, perspectives, news and reviews dealing with all aspects of the generation of molecular diversity, application of diversity for screening against alternative targets of all types (biological, biophysical, technological), analysis of results obtained and their application in various scientific disciplines/approaches including: combinatorial chemistry and parallel synthesis; small molecule libraries; microwave synthesis; flow synthesis; fluorous synthesis; diversity oriented synthesis (DOS); nanoreactors; click chemistry; multiplex technologies; fragment- and ligand-based design; structure/function/SAR; computational chemistry and molecular design; chemoinformatics; screening techniques and screening interfaces; analytical and purification methods; robotics, automation and miniaturization; targeted libraries; display libraries; peptides and peptoids; proteins; oligonucleotides; carbohydrates; natural diversity; new methods of library formulation and deconvolution; directed evolution, origin of life and recombination; search techniques, landscapes, random chemistry and more;
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