Abundance and diversity of methicillin-resistant bacteria from bathroom surfaces at workplaces using CHROMagar media, 16S, and dnaJ gene sequence typing.

International journal of molecular epidemiology and genetics Pub Date : 2024-04-15 eCollection Date: 2024-01-01 DOI:10.62347/EJQK3362
Harshul Singh, Bryan Gibb, Reta Abdi
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Abstract

University campus communities consist of dynamic and diverse human populations originated from different regions of the country or the world. Their national/global movement to and from campus may contribute to the spread and buildup of methicillin-resistant (MR) bacteria, including MR Staphylococci (MRS) on high-touch surfaces, sinks, and toilets. However, studies on MR bacteria contamination of surfaces, sinks, and toilets are scarce in workplaces outside of healthcare settings. Hence, little is known whether university communities contaminate campus bathrooms by MR bacteria. This study evaluated the abundance, identity, and phylogenetics of MR bacteria grown on CHROMagar MRSA media from bathrooms at workplaces. We collected 21 sink and 21 toilet swab samples from 10 buildings on campus and cultured them on CHROMagar MRSA media, extracted DNA from MR bacteria colonies, sequenced PCR products of 16S and dnaJ primers, determined the sequence identities by BLAST search, and constructed a phylogenetic tree. Of 42 samples, 57.1% (24/42) harbored MR bacteria. MR bacteria were more prevalent on the sink (61.9%) than in the toilet (52.2%) and in male bathrooms (54.2%) than in female bathrooms (41.7%). The colony count on the bathroom surfaces of 42 samples varied in that 42.9% (18/42), 33.3, 14.3, and 9.5% of samples harbored 0, 100, and > 1000 MR bacteria colonies, respectively. Of MR bacteria sequenced, BLAST search and phylogenetic analysis showed that Staphylococcus accounted for 60% of the MR bacteria and the rest were non-Staphylococci. Of Staphylococcus carrying MR (n = 15), 53.3% were S. hemolyticus followed by S. lugdunensis (26.7%), S. epidermidis (8%), and a newly discovered S. borealis in 2020 (4%). Of non-Staphylococci MR bacteria, 20% accounted for Sphingomonas koreensis. Campus bathrooms serve as a reservoir for diverse bacteria carrying MR, which pose a direct risk of infection and a potential source of horizontal gene transfer. To reduce the health risk posed by MR bacteria in high traffic areas such as bathrooms additional environmental monitoring and improved decontamination practices are needed.

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使用 CHROMagar 培养基、16S 和 dnaJ 基因序列分型,研究工作场所浴室表面耐甲氧西林细菌的数量和多样性。
大学校园社区由来自全国或全球不同地区、充满活力和多样性的人群组成。他们在全国/全球范围内进出校园,可能会导致耐甲氧西林(MR)细菌的传播和积累,包括高接触表面、水槽和厕所上的耐甲氧西林葡萄球菌(MRS)。然而,在医疗机构以外的工作场所,有关表面、水槽和厕所的 MR 细菌污染的研究很少。因此,人们对大学社区的校园卫生间是否受到 MR 细菌污染知之甚少。本研究评估了在工作场所卫生间的 CHROMagar MRSA 培养基上生长的 MR 细菌的数量、特征和系统发育。我们从校园的 10 栋建筑物中采集了 21 份水槽和 21 份马桶拭子样本,并将它们放在 CHROMagar MRSA 培养基上进行培养,从 MR 细菌菌落中提取 DNA,对 16S 和 dnaJ 引物的 PCR 产物进行测序,通过 BLAST 搜索确定序列同一性,并构建系统发生树。在 42 个样本中,57.1%(24/42)含有 MR 细菌。MR细菌在洗手盆(61.9%)中的感染率高于马桶(52.2%),在男浴室(54.2%)中的感染率高于女浴室(41.7%)。42 个样本的浴室表面菌落数各不相同,分别有 42.9%(18/42)、33.3%、14.3% 和 9.5%的样本含有 0、100 和大于 1000 个 MR 细菌菌落。在测序的 MR 细菌中,BLAST 搜索和系统进化分析表明,葡萄球菌占 MR 细菌的 60%,其余为非葡萄球菌。在携带 MR 的葡萄球菌(n = 15)中,53.3% 是溶血性葡萄球菌,其次是卢格杜氏葡萄球菌(26.7%)、表皮葡萄球菌(8%),以及 2020 年新发现的一种北方葡萄球菌(4%)。在非葡萄球菌的 MR 细菌中,韩国鞘氨单胞菌占 20%。校园浴室是携带 MR 的各种细菌的贮藏地,既有直接的感染风险,也是潜在的横向基因转移源。为了减少浴室等人流量大的地方的 MR 细菌对健康造成的威胁,需要进行更多的环境监测和改进净化方法。
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