Making the cut: Multiscale simulation of membrane remodeling

IF 6.1 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Current opinion in structural biology Pub Date : 2024-05-12 DOI:10.1016/j.sbi.2024.102831
Jeriann Beiter, Gregory A. Voth
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Abstract

Biological membranes are dynamic heterogeneous materials, and their shape and organization are tightly coupled to the properties of the proteins in and around them. However, the length scales of lipid and protein dynamics are far below the size of membrane-bound organelles, much less an entire cell. Therefore, multiscale modeling approaches are often necessary to build a comprehensive picture of the interplay of these factors, and have provided critical insights into our understanding of membrane dynamics. Here, we review computational methods for studying membrane remodeling, as well as passive and active examples of protein-driven membrane remodeling. As the field advances towards the modeling of key aspects of organelles and whole cells – an increasingly accessible regime of study – we summarize here recent successes and offer comments on future trends.

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进行切割:膜重塑的多尺度模拟
生物膜是一种动态异质材料,其形状和组织与膜内及其周围蛋白质的特性密切相关。然而,脂质和蛋白质动态的长度尺度远远低于膜结合细胞器的大小,更不用说整个细胞了。因此,多尺度建模方法往往是建立这些因素相互作用的全面图景所必需的,并为我们理解膜动力学提供了重要的见解。在此,我们回顾了研究膜重塑的计算方法,以及蛋白质驱动膜重塑的被动和主动实例。随着该领域向细胞器和整个细胞关键方面的建模推进--这是一个越来越容易获得的研究体系--我们在此总结了最近的成功,并对未来的趋势提出了看法。
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来源期刊
Current opinion in structural biology
Current opinion in structural biology 生物-生化与分子生物学
CiteScore
12.20
自引率
2.90%
发文量
179
审稿时长
6-12 weeks
期刊介绍: Current Opinion in Structural Biology (COSB) aims to stimulate scientifically grounded, interdisciplinary, multi-scale debate and exchange of ideas. It contains polished, concise and timely reviews and opinions, with particular emphasis on those articles published in the past two years. In addition to describing recent trends, the authors are encouraged to give their subjective opinion of the topics discussed. In COSB, we help the reader by providing in a systematic manner: 1. The views of experts on current advances in their field in a clear and readable form. 2. Evaluations of the most interesting papers, annotated by experts, from the great wealth of original publications. [...] The subject of Structural Biology is divided into twelve themed sections, each of which is reviewed once a year. Each issue contains two sections, and the amount of space devoted to each section is related to its importance. -Folding and Binding- Nucleic acids and their protein complexes- Macromolecular Machines- Theory and Simulation- Sequences and Topology- New constructs and expression of proteins- Membranes- Engineering and Design- Carbohydrate-protein interactions and glycosylation- Biophysical and molecular biological methods- Multi-protein assemblies in signalling- Catalysis and Regulation
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