Emergence of an IncX3 plasmid co-harbouring the carbapenemase genes blaNDM-5 and blaOXA-181.

Abstract

Background: The spread of transmissible plasmids with carbapenemase genes has contributed to a global increase in carbapenemase-producing Enterobacterales over the past two decades, with bla_NDM and bla_OXA among the most prevalent carbapenemase genes.

Objectives: To characterize an Escherichia coli isolate co-carrying bla_NDM-5 and bla_OXA-181 (JBEHAAB-19-0176) that was isolated in the Japan Antimicrobial Resistant Bacterial Surveillance in 2019-20, and to evaluate the functional advantage of carrying both genes as opposed to only one.

Methods: The whole-genome sequence of the isolate was determined using long- and short-read sequencing. Growth assay and co-culture experiments were performed for phenotypic characterization in the presence of different β-lactam antibiotics.

Results: WGS analysis showed that bla_NDM-5 and bla_OXA-181 were carried by the same IncX3 plasmid, pJBEHAAB-19-0176_NDM-OXA. Genetic characterization of the plasmid suggested that the plasmid emerged through the formation of a co-integrate and resolution of two typical IncX3 plasmids harbouring bla_NDM-5 and bla_OXA-181, which involved two recombination events at the IS3000 and IS26 sequences. When cultured in the presence of piperacillin or cefpodoxime, the growth rate of the transformant co-harbouring bla_NDM-5 and bla_OXA-181 was significantly higher than the transformant with only bla_NDM-5. Furthermore, in co-culture where the two bla_NDM-5-harbouring transformants were allowed to compete directly, the strain additionally harbouring bla_OXA-181 showed a marked growth advantage.

Conclusions: The additional carriage of bla_OXA-181 confers a selective advantage to bacteria in the presence of piperacillin and cefpodoxime. These findings may explain the current epidemiology of carbapenemase-producing Enterobacterales, in which bacteria carrying both bla_NDM-5 and bla_OXA-48-like genes have emerged independently worldwide.