Reducing overconfident errors in molecular property classification using Posterior Network

IF 6.7 Q1 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Patterns Pub Date : 2024-05-08 DOI:10.1016/j.patter.2024.100991
Zhehuan Fan, Jie Yu, Xiang Zhang, Yijie Chen, Shihui Sun, Yuanyuan Zhang, Mingan Chen, Fu Xiao, Wenyong Wu, Xutong Li, Mingyue Zheng, Xiaomin Luo, Dingyan Wang
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引用次数: 0

Abstract

Deep-learning-based classification models are increasingly used for predicting molecular properties in drug development. However, traditional classification models using the Softmax function often give overconfident mispredictions for out-of-distribution samples, highlighting a critical lack of accurate uncertainty estimation. Such limitations can result in substantial costs and should be avoided during drug development. Inspired by advances in evidential deep learning and Posterior Network, we replaced the Softmax function with a normalizing flow to enhance the uncertainty estimation ability of the model in molecular property classification. The proposed strategy was evaluated across diverse scenarios, including simulated experiments based on a synthetic dataset, ADMET predictions, and ligand-based virtual screening. The results demonstrate that compared with the vanilla model, the proposed strategy effectively alleviates the problem of giving overconfident but incorrect predictions. Our findings support the promising application of evidential deep learning in drug development and offer a valuable framework for further research.

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利用后验网络减少分子特性分类中的过度自信误差
基于深度学习的分类模型越来越多地用于预测药物开发中的分子特性。然而,使用 Softmax 函数的传统分类模型往往会对分布外样本做出过于自信的错误预测,这凸显了准确不确定性估计的严重不足。这种局限性会导致巨大的成本,在药物开发过程中应该避免。受证据深度学习和后验网络的启发,我们用归一化流取代了 Softmax 函数,以增强模型在分子性质分类中的不确定性估计能力。我们在不同的场景中评估了所提出的策略,包括基于合成数据集的模拟实验、ADMET 预测和基于配体的虚拟筛选。结果表明,与 vanilla 模型相比,所提出的策略有效地缓解了预测过于自信但不正确的问题。我们的研究结果支持了证据深度学习在药物开发中的应用前景,并为进一步研究提供了有价值的框架。
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来源期刊
Patterns
Patterns Decision Sciences-Decision Sciences (all)
CiteScore
10.60
自引率
4.60%
发文量
153
审稿时长
19 weeks
期刊介绍:
期刊最新文献
AnnoMate: Exploring and annotating integrated molecular data through custom interactive visualizations Balancing innovation and integrity in peer review The stacking cell puzzle To democratize research with sensitive data, we should make synthetic data more accessible FAIM: Fairness-aware interpretable modeling for trustworthy machine learning in healthcare
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