{"title":"Regulatory disturbances in the dynamical signaling systems of \\(Ca^{2+}\\) and NO in fibroblasts cause fibrotic disorders","authors":"Ankit Kothiya, Neeru Adlakha","doi":"10.1007/s10867-024-09657-3","DOIUrl":null,"url":null,"abstract":"<div><p>Studying the calcium dynamics within a fibroblast cell individually has provided only a restricted understanding of its functions. However, research efforts focusing on systems biology approaches for such investigations have been largely neglected by researchers until now. Fibroblast cells rely on signaling from calcium <span>\\((Ca^{2+})\\)</span> and nitric oxide (<i>NO</i>) to maintain their physiological functions and structural stability. Various studies have demonstrated the correlation between <i>NO</i> and the control of <span>\\(Ca^{2+}\\)</span> dynamics in cells. However, there is currently no existing model to assess the disruptions caused by various factors in regulatory dynamics, potentially resulting in diverse fibrotic disorders. A mathematical model has been developed to investigate the effects of changes in parameters such as buffer, receptor, sarcoplasmic endoplasmic reticulum <span>\\(Ca^{2+}\\)</span>-ATPase (<i>SERCA</i>) pump, and source influx on the regulation and dysregulation of spatiotemporal calcium and <i>NO</i> dynamics in fibroblast cells. This model is based on a system of reaction-diffusion equations, and numerical simulations are conducted using the finite element method. Disturbances in key processes related to calcium and nitric oxide, including source influx, buffer mechanism, <i>SERCA</i> pump, and inositol trisphosphate <span>\\((IP_3)\\)</span> receptor, may contribute to deregulation in the calcium and <i>NO</i> dynamics within fibroblasts. The findings also provide new insights into the extent and severity of disorders resulting from alterations in various parameters, potentially leading to deregulation and the development of fibrotic disease.</p></div>","PeriodicalId":612,"journal":{"name":"Journal of Biological Physics","volume":null,"pages":null},"PeriodicalIF":1.8000,"publicationDate":"2024-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biological Physics","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s10867-024-09657-3","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOPHYSICS","Score":null,"Total":0}
引用次数: 0
Abstract
Studying the calcium dynamics within a fibroblast cell individually has provided only a restricted understanding of its functions. However, research efforts focusing on systems biology approaches for such investigations have been largely neglected by researchers until now. Fibroblast cells rely on signaling from calcium \((Ca^{2+})\) and nitric oxide (NO) to maintain their physiological functions and structural stability. Various studies have demonstrated the correlation between NO and the control of \(Ca^{2+}\) dynamics in cells. However, there is currently no existing model to assess the disruptions caused by various factors in regulatory dynamics, potentially resulting in diverse fibrotic disorders. A mathematical model has been developed to investigate the effects of changes in parameters such as buffer, receptor, sarcoplasmic endoplasmic reticulum \(Ca^{2+}\)-ATPase (SERCA) pump, and source influx on the regulation and dysregulation of spatiotemporal calcium and NO dynamics in fibroblast cells. This model is based on a system of reaction-diffusion equations, and numerical simulations are conducted using the finite element method. Disturbances in key processes related to calcium and nitric oxide, including source influx, buffer mechanism, SERCA pump, and inositol trisphosphate \((IP_3)\) receptor, may contribute to deregulation in the calcium and NO dynamics within fibroblasts. The findings also provide new insights into the extent and severity of disorders resulting from alterations in various parameters, potentially leading to deregulation and the development of fibrotic disease.
单独研究成纤维细胞内的钙动态只能有限地了解其功能。然而,迄今为止,以系统生物学方法为重点的研究工作在很大程度上被研究人员所忽视。成纤维细胞依靠钙(C a 2 +)和一氧化氮(NO)的信号传递来维持其生理功能和结构稳定性。各种研究都证明了一氧化氮与细胞内 C a 2 + 动态控制之间的相关性。然而,目前还没有现成的模型来评估各种因素对调控动态造成的破坏,从而可能导致各种纤维化疾病。我们建立了一个数学模型,以研究缓冲剂、受体、肌浆内质网 C a 2 + ATP 酶(SERCA)泵和源流入等参数的变化对成纤维细胞中钙和 NO 时空动态调节和失调的影响。该模型基于反应-扩散方程系统,并采用有限元法进行了数值模拟。与钙和一氧化氮有关的关键过程,包括钙源流入、缓冲机制、SERCA 泵和三磷酸肌醇(I P 3)受体的紊乱,可能会导致成纤维细胞内的钙和一氧化氮动力学失调。这些发现还为我们提供了新的视角,使我们了解各种参数的改变可能导致的失调程度和严重性,以及纤维化疾病的发展。
期刊介绍:
Many physicists are turning their attention to domains that were not traditionally part of physics and are applying the sophisticated tools of theoretical, computational and experimental physics to investigate biological processes, systems and materials.
The Journal of Biological Physics provides a medium where this growing community of scientists can publish its results and discuss its aims and methods. It welcomes papers which use the tools of physics in an innovative way to study biological problems, as well as research aimed at providing a better understanding of the physical principles underlying biological processes.