Regulatory Mechanisms of Pollen Development: Transcriptomic and Bioinformatic Insights into the Role of β-1,3 Glucanase Gene (LbGlu1) in Lycium barbarum

IF 3.1 3区 农林科学 Q1 HORTICULTURE Horticulturae Pub Date : 2024-05-16 DOI:10.3390/horticulturae10050512
Xin Zhang, Zhanlin Bei, Jinglong Li, Haijun Ma, Cuiping Wang, Wendi Xu, Yufeng Ren, Jun Zhou, Xingfu Yan
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Abstract

Pollen fertility is a critical factor in seed development and crop breeding. Extensive studies have explored the mechanisms of pollen fertility in model plants and economic crops. However, the mechanisms of pollen abortion in medicinal and edible plants, including Lycium barbarum, remain elusive. This study utilized transcriptome analysis to identify key genes and regulatory networks implicated in pollen fertility in L. barbarum. The results demonstrated differential expression of 12,185 genes (DEGs) between the sterile and fertile lines, encompassing 489 genes that exhibited variation across the five stages of pollen development. Additionally, GO and KEGG enrichment analyses indicated that the DEGs were predominantly associated with energy metabolism, carbohydrate metabolism, and notably, hydrolase activity. Co-expression network analysis unveiled two modules intimately associated with fertility, each comprising 908 and 756 hub genes, incorporating β-1,3-glucanase genes (Glu) and co-expressed transcription factors (TFs). Phylogenetic analysis implied that LbGlu1 was a potential candidate gene implicated in regulating pollen abortion in L. barbarum. This work advances a novel understanding of pollen abortion in L. barbarum and offers theoretical support for the utilization of sterility genes to enhance crop improvement.
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花粉发育的调控机制:对枸杞中β-1,3葡聚糖酶基因(LbGlu1)作用的转录组学和生物信息学见解
花粉育性是种子发育和作物育种的关键因素。大量研究已经探索了模式植物和经济作物的花粉育性机制。然而,包括枸杞在内的药用植物和食用植物的花粉流产机制仍然难以捉摸。本研究利用转录组分析确定了与枸杞花粉育性有关的关键基因和调控网络。结果表明,不育系和可育系之间有 12,185 个基因(DEGs)的表达存在差异,其中 489 个基因在花粉发育的五个阶段表现出差异。此外,GO 和 KEGG 富集分析表明,DEGs 主要与能量代谢、碳水化合物代谢有关,尤其是与水解酶活性有关。共表达网络分析揭示了与肥力密切相关的两个模块,分别由 908 个和 756 个中枢基因组成,其中包括 β-1,3-葡聚糖酶基因(Glu)和共表达转录因子(TFs)。系统发育分析表明,LbGlu1 是一个潜在的候选基因,参与调控 L. barbarum 的花粉流产。这项工作加深了人们对野豌豆花粉流产的新认识,并为利用不育基因改良作物提供了理论支持。
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来源期刊
Horticulturae
Horticulturae HORTICULTURE-
CiteScore
3.50
自引率
19.40%
发文量
998
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