Phytochemical inhibitors from Leucas aspera against the target proteins induced by Trichophyton mentagrophytes using computational techniques

IF 3.5 4区 生物学 Q2 MICROBIOLOGY Journal of Basic Microbiology Pub Date : 2024-05-21 DOI:10.1002/jobm.202400112
Monalisha Giri, Sagarika Parida
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Abstract

Dermatophytosis is a cutaneous infection that is able to degrade the keratinized tissues of the animal/human body, like skin, nails, and hair, causing chronic or subacute infection with the contact of some specific fungal strains. Trichophyton mentagrophytes are the most potential fungal pathogen causing dermatophytoses. The present study focuses on computationally based in silico antifungal activity of selected phytocompounds of Leucas aspera (Willd.) Link. against dermatophytic fungus, T. mentagrophytes. Validation and screening of derived phytocompounds is performed using Lipinski rule of five and toxicity test through Protox-II. Five target genes involved in dermatophytosis, induced by T. mentagrophytes are retrieved from the UniProt Database, and the corresponding proteins such as glucan 1,3-beta-glucosidase ARB_02797, Probable class II chitinase ARB_00204, squalene monooxygenase, actin, and ubiquitin are selected for in silico study. Three-dimensional structures of the target protein were computationally determined and validated through modeling tools and techniques due to the lack of validated protein structures in the database. Then, these proteins are used for in silico molecular docking through the AutoDock Vina tool to find out the promising phytocompounds. This study could be utilized in designing more effective drugs against T. mentagrophytes. Based on this work, a plant-based natural alternative can be added to the treatment of dermatophytosis rather than synthetic supplements.

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利用计算技术从白头翁中提取植物化学抑制剂来抑制由毛癣菌诱导的目标蛋白质。
皮肤癣菌病是一种皮肤感染,它能使动物/人体的皮肤、指甲和毛发等角质化组织变性,并与一些特定的真菌菌株接触,引起慢性或亚急性感染。毛癣菌是最有可能引起皮肤癣菌病的真菌病原体。本研究的重点是基于计算方法对 Leucas aspera (Willd.) Link.利用利宾斯基五分法对衍生植物化合物进行了验证和筛选,并通过 Protox-II 进行了毒性测试。从 UniProt 数据库中检索到了由曼地夫真菌诱导的皮癣病中涉及的五个目标基因,并选择了相应的蛋白质,如葡聚糖 1,3-beta- 葡萄糖苷酶 ARB_02797、可能的第二类几丁质酶 ARB_00204、角鲨烯单氧化酶、肌动蛋白和泛素进行了硅学研究。由于数据库中缺乏有效的蛋白质结构,因此通过建模工具和技术对目标蛋白质的三维结构进行了计算和验证。然后,通过 AutoDock Vina 工具对这些蛋白质进行硅学分子对接,以找出有前景的植物化合物。这项研究可用于设计更有效的抗曼地夫球菌药物。在这项工作的基础上,可以在治疗皮癣菌病的过程中增加一种基于植物的天然替代品,而不是合成补充剂。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Basic Microbiology
Journal of Basic Microbiology 生物-微生物学
CiteScore
6.10
自引率
0.00%
发文量
134
审稿时长
1.8 months
期刊介绍: The Journal of Basic Microbiology (JBM) publishes primary research papers on both procaryotic and eucaryotic microorganisms, including bacteria, archaea, fungi, algae, protozoans, phages, viruses, viroids and prions. Papers published deal with: microbial interactions (pathogenic, mutualistic, environmental), ecology, physiology, genetics and cell biology/development, new methodologies, i.e., new imaging technologies (e.g. video-fluorescence microscopy, modern TEM applications) novel molecular biology methods (e.g. PCR-based gene targeting or cassettes for cloning of GFP constructs).
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