ChIP-seq and RNA-seq Reveal the Involvement of Histone Lactylation Modification in Gestational Diabetes Mellitus

IF 3.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Journal of Proteome Research Pub Date : 2024-05-22 DOI:10.1021/acs.jproteome.3c00727
Xiaman Huang, KaCheuk Yip, Hanhui Nie, Ruiping Chen, Xiufang Wang, Yun Wang, Weizhao Lin and Ruiman Li*, 
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Abstract

Lactylation is a novel post-translational modification of proteins. Although the histone lactylation modification has been reported to be involved in glucose metabolism, its role and molecular pathways in gestational diabetes mellitus (GDM) are still unclear. This study aims to elucidate the histone lactylation modification landscapes of GDM patients and explore lactylation-modification-related genes involved in GDM. We employed a combination of RNA-seq analysis and chromatin immunoprecipitation sequencing (ChIP-seq) analysis to identify upregulated differentially expressed genes (DEGs) with hyperhistone lactylation modification in GDM. We demonstrated that the levels of lactate and histone lactylation were significantly elevated in GDM patients. DEGs were involved in diabetes-related pathways, such as the PI3K-Akt signaling pathway, Jak-STAT signaling pathway, and mTOR signaling pathway. ChIP-seq analysis indicated that histone lactylation modification in the promoter regions of the GDM group was significantly changed. By integrating the results of RNA-seq and ChIP-seq analysis, we found that CACNA2D1 is a key gene for histone lactylation modification and is involved in the progression of GDM by promoting cell vitality and proliferation. In conclusion, we identified the key gene CACNA2D1, which upregulated and exhibited hypermodification of histone lactylation in GDM. These findings establish a theoretical groundwork for the targeted therapy of GDM.

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ChIP-seq和RNA-seq揭示了组蛋白乳酰化修饰对妊娠糖尿病的影响
乳化是一种新的蛋白质翻译后修饰。虽然有报道称组蛋白乳化修饰参与葡萄糖代谢,但其在妊娠糖尿病(GDM)中的作用和分子途径仍不清楚。本研究旨在阐明 GDM 患者的组蛋白乳酰化修饰图谱,并探索参与 GDM 的乳酰化修饰相关基因。我们采用RNA-seq分析和染色质免疫沉淀测序(ChIP-seq)分析相结合的方法,鉴定了GDM中高组蛋白乳酰化修饰的上调差异表达基因(DEGs)。结果表明,GDM 患者的乳酸水平和组蛋白乳酸化水平显著升高。DEGs参与了糖尿病相关通路,如PI3K-Akt信号通路、Jak-STAT信号通路和mTOR信号通路。ChIP-seq分析表明,GDM组启动子区域的组蛋白乳化修饰发生了显著变化。综合 RNA-seq 和 ChIP-seq 分析结果,我们发现 CACNA2D1 是组蛋白乳化修饰的关键基因,通过促进细胞活力和增殖参与 GDM 的进展。总之,我们发现了关键基因 CACNA2D1,它在 GDM 中上调并表现出组蛋白乳酰化的过度修饰。这些发现为 GDM 的靶向治疗奠定了理论基础。
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来源期刊
Journal of Proteome Research
Journal of Proteome Research 生物-生化研究方法
CiteScore
9.00
自引率
4.50%
发文量
251
审稿时长
3 months
期刊介绍: Journal of Proteome Research publishes content encompassing all aspects of global protein analysis and function, including the dynamic aspects of genomics, spatio-temporal proteomics, metabonomics and metabolomics, clinical and agricultural proteomics, as well as advances in methodology including bioinformatics. The theme and emphasis is on a multidisciplinary approach to the life sciences through the synergy between the different types of "omics".
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