Whole-genome sequencing of marine water-derived Curvularia verruculosa KHW-7: a pioneering study

Payal Baranda, Shaikhul Islam, Ashish Modi, Harsh Mistry, Sami Al Obaid, Mohammad Javed Ansari, Virendra Kumar Yadav, Ashish Patel, Madhvi Joshi, D. Sahoo, Himanshu Bariya
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Abstract

Marine microorganisms are renowned for being a rich source of new secondary metabolites that are significant to humans. The fungi strain KHW-7 was isolated from the seawater collected from the Gulf of Khambhat, India, and identified as Curvularia verruculosa KHW-7. On a next-generation sequencing platform, C. verruculosa KHW-7’s whole-genome sequencing (WGS) and gene annotation were carried out using several bioinformatic methods. The 31.59 MB genome size, 52.3% GC, and 158 bp mean read length were discovered using WGS. This genome also contained 9,745 protein-coding genes, including 852 secreted proteins and 2048 transmembrane proteins. The antiSMASH algorithm used to analyze genomes found 25 secondary metabolite biosynthetic gene clusters (BGCs) that are abundant in terpene, non-ribosomal peptide synthetase (NRPS), and polyketides type 1 (T1PKS). To our knowledge, this is the first whole-genome sequence report of C. verruculosa. The WGS analysis of C. verruculosa KHW-7 indicated that this marine-derived fungus could be an efficient generator of bioactive secondary metabolites and an important industrial enzyme, both of which demand further investigation and development.
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源自海水的莪术 KHW-7 的全基因组测序:一项开创性研究
众所周知,海洋微生物是对人类具有重要意义的新次级代谢物的丰富来源。真菌菌株 KHW-7 从印度 Khambhat 湾采集的海水中分离出来,并被鉴定为 Curvularia verruculosa KHW-7。在新一代测序平台上,采用多种生物信息学方法对 C. verruculosa KHW-7 进行了全基因组测序(WGS)和基因注释。通过 WGS 测序发现,该基因组大小为 31.59 MB,GC 占 52.3%,平均读长为 158 bp。该基因组还包含 9745 个蛋白质编码基因,其中包括 852 个分泌蛋白和 2048 个跨膜蛋白。用于分析基因组的反SMASH算法发现了25个次级代谢物生物合成基因簇(BGCs),其中萜烯、非核糖体肽合成酶(NRPS)和多酮类化合物1型(T1PKS)含量丰富。据我们所知,这是 C. verruculosa 的首个全基因组序列报告。对 C. verruculosa KHW-7 的 WGS 分析表明,这种源自海洋的真菌可能是生物活性次生代谢产物的有效生成者和重要的工业酶,这两方面都需要进一步的研究和开发。
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