The importance of definitions in crystallography

IF 2.9 2区 材料科学 Q2 CHEMISTRY, MULTIDISCIPLINARY IUCrJ Pub Date : 2024-07-01 DOI:10.1107/S2052252524004056
Olga Anosova , Vitaliy Kurlin , Marjorie Senechal , D. Gratias (Editor)
{"title":"The importance of definitions in crystallography","authors":"Olga Anosova ,&nbsp;Vitaliy Kurlin ,&nbsp;Marjorie Senechal ,&nbsp;D. Gratias (Editor)","doi":"10.1107/S2052252524004056","DOIUrl":null,"url":null,"abstract":"<div><p>This paper proposes a rigorous definition of a periodic structure as an equivalence class of periodic sets under rigid motion, which is a composition of translations and rotations.</p></div><div><p>This paper was motivated by the articles ‘Same or different – that is the question’ in <em>CrystEngComm</em> (July 2020) and ‘Change to the definition of a crystal’ in the <em>IUCr Newsletter</em> (June 2021). Experimental approaches to crystal comparisons require rigorously defined classifications in crystallography and beyond. Since crystal structures are determined in a rigid form, their strongest equivalence in practice is rigid motion, which is a composition of translations and rotations in 3D space. Conventional representations based on reduced cells and standardizations theoretically distinguish all periodic crystals. However, all cell-based representations are inherently discontinuous under almost any atomic displacement that can arbitrarily scale up a reduced cell. Hence, comparison of millions of known structures in materials databases requires continuous distance metrics.</p></div>","PeriodicalId":14775,"journal":{"name":"IUCrJ","volume":"11 4","pages":"Pages 453-463"},"PeriodicalIF":2.9000,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11220884/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"IUCrJ","FirstCategoryId":"88","ListUrlMain":"https://www.sciencedirect.com/org/science/article/pii/S2052252524000447","RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

Abstract

This paper proposes a rigorous definition of a periodic structure as an equivalence class of periodic sets under rigid motion, which is a composition of translations and rotations.

This paper was motivated by the articles ‘Same or different – that is the question’ in CrystEngComm (July 2020) and ‘Change to the definition of a crystal’ in the IUCr Newsletter (June 2021). Experimental approaches to crystal comparisons require rigorously defined classifications in crystallography and beyond. Since crystal structures are determined in a rigid form, their strongest equivalence in practice is rigid motion, which is a composition of translations and rotations in 3D space. Conventional representations based on reduced cells and standardizations theoretically distinguish all periodic crystals. However, all cell-based representations are inherently discontinuous under almost any atomic displacement that can arbitrarily scale up a reduced cell. Hence, comparison of millions of known structures in materials databases requires continuous distance metrics.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
晶体学中定义的重要性。
本文的灵感来自《晶体工程通讯》(CrystEngComm)(2020 年 7 月)中的文章 "相同还是不同--这是一个问题 "和《国际晶体学联合会通讯》(IUCr Newsletter)(2021 年 6 月)中的文章 "晶体定义的改变"。晶体比较的实验方法需要晶体学及其他领域严格定义的分类。由于晶体结构是以刚性形式确定的,因此它们在实践中的最强等价物是刚性运动,即三维空间中的平移和旋转。基于还原晶胞和标准化的传统表示法从理论上区分了所有周期性晶体。然而,所有基于晶胞的表示法在几乎任何原子位移的情况下都是不连续的,而原子位移可以任意放大缩小晶胞。因此,要比较材料数据库中的数百万个已知结构,就需要连续的距离度量。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
IUCrJ
IUCrJ CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
7.50
自引率
5.10%
发文量
95
审稿时长
10 weeks
期刊介绍: IUCrJ is a new fully open-access peer-reviewed journal from the International Union of Crystallography (IUCr). The journal will publish high-profile articles on all aspects of the sciences and technologies supported by the IUCr via its commissions, including emerging fields where structural results underpin the science reported in the article. Our aim is to make IUCrJ the natural home for high-quality structural science results. Chemists, biologists, physicists and material scientists will be actively encouraged to report their structural studies in IUCrJ.
期刊最新文献
Structural transformations and stability of benzo[a]pyrene under high pressure. Tracking anharmonic oscillations in the structure of β-1,3-diacetylpyrene. Exploiting fourth-generation synchrotron radiation for enzyme and photoreceptor characterization. Structure of an ex vivoDrosophila TOM complex determined by single-particle cryoEM. Structure of MltG from Mycobacterium abscessus reveals structural plasticity between composed domains
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1