Molecular Structure, Spectroscopic, Frontier Molecular Orbital Analysis, Molecular Docking Studies, and In Vitro DNA-Binding Studies of Osmium(II)-Cymene Complexes with Aryl Phosphine and Aryl Phosphonium Assemblies

IF 4.7 3区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Bioinorganic Chemistry and Applications Pub Date : 2024-05-29 DOI:10.1155/2024/6697523
Kgaugelo C. Tapala, Nqobile G. Ndlangamandla, Mpho P. Ngoepe, Hadley S. Clayton
{"title":"Molecular Structure, Spectroscopic, Frontier Molecular Orbital Analysis, Molecular Docking Studies, and In Vitro DNA-Binding Studies of Osmium(II)-Cymene Complexes with Aryl Phosphine and Aryl Phosphonium Assemblies","authors":"Kgaugelo C. Tapala, Nqobile G. Ndlangamandla, Mpho P. Ngoepe, Hadley S. Clayton","doi":"10.1155/2024/6697523","DOIUrl":null,"url":null,"abstract":"X-ray crystallography, spectroscopy, computational methods, molecular docking studies, and <i>in vitro</i> DNA-binding studies have been useful in the investigations of intermolecular and intramolecular interactions of osmium-cymene oxalato complexes with aryl phosphine and aryl phosphonium groups in both primary and secondary coordination spheres, respectively. Molecular structures of the novel complexes PPh<sub>4</sub>[Os(<i>η</i><sup>6</sup>-<i>p</i>-cymene)Br(<i>κ</i><sup>2</sup>-<i>O,O′</i>-C<sub>2</sub>O<sub>4</sub>)] (<b>1</b>) and [Os(<i>η</i><sup>6</sup>-<i>p</i>-cymene) (<i>κ</i><sup>2</sup>-<i>O,O′</i>-C<sub>2</sub>O<sub>4</sub>)PPh<sub>3</sub>] (<b>2</b>) were resolved by single-crystal X-ray diffraction (XRD). Primary and secondary coordination sphere contacts were investigated using Hirshfeld surface analysis which was supported by molecular docking (MD) studies. The MD data obtained predicted significant differences in binding energy across three receptors for the two osmium complexes. An <i>in vitro</i> DNA-binding study was accomplished using UV-Vis spectroscopy which showed that both <b>1</b> and <b>2</b> bond with DNA through an intercalation approach. The optimized molecular geometry, frontier molecular orbital (E<sub>HOMO</sub> and E<sub>LUMO</sub>) energies, global electrophilicity index (<i>ω</i>), chemical hardness (<i>η</i>), chemical potential (<i>µ</i>), and the energy band gap (E<sub>HOMO</sub>–E<sub>LUMO</sub>) were calculated utilizing density functional theory (DFT) methods. Computed structural parameters (bond lengths and angles) support the experimental single-crystal XRD data.","PeriodicalId":8914,"journal":{"name":"Bioinorganic Chemistry and Applications","volume":null,"pages":null},"PeriodicalIF":4.7000,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bioinorganic Chemistry and Applications","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1155/2024/6697523","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

X-ray crystallography, spectroscopy, computational methods, molecular docking studies, and in vitro DNA-binding studies have been useful in the investigations of intermolecular and intramolecular interactions of osmium-cymene oxalato complexes with aryl phosphine and aryl phosphonium groups in both primary and secondary coordination spheres, respectively. Molecular structures of the novel complexes PPh4[Os(η6-p-cymene)Br(κ2-O,O′-C2O4)] (1) and [Os(η6-p-cymene) (κ2-O,O′-C2O4)PPh3] (2) were resolved by single-crystal X-ray diffraction (XRD). Primary and secondary coordination sphere contacts were investigated using Hirshfeld surface analysis which was supported by molecular docking (MD) studies. The MD data obtained predicted significant differences in binding energy across three receptors for the two osmium complexes. An in vitro DNA-binding study was accomplished using UV-Vis spectroscopy which showed that both 1 and 2 bond with DNA through an intercalation approach. The optimized molecular geometry, frontier molecular orbital (EHOMO and ELUMO) energies, global electrophilicity index (ω), chemical hardness (η), chemical potential (µ), and the energy band gap (EHOMO–ELUMO) were calculated utilizing density functional theory (DFT) methods. Computed structural parameters (bond lengths and angles) support the experimental single-crystal XRD data.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
带有芳基膦和芳基鏻组装的锇(II)-百里香配合物的分子结构、光谱、前沿分子轨道分析、分子对接研究和体外 DNA 结合研究
X 射线晶体学、光谱学、计算方法、分子对接研究和体外 DNA 结合研究有助于研究锇-亚甲基草酸络合物与芳基膦和芳基鏻基团在一级和二级配位层中的分子间和分子内相互作用。新型配合物 PPh4[Os(η6-p-cymene)Br(κ2-O,O′-C2O4)] (1) 和 [Os(η6-p-cymene) (κ2-O,O′-C2O4)PPh3] (2) 的分子结构已通过单晶 X 射线衍射 (XRD) 得到解析。利用分子对接(MD)研究支持的 Hirshfeld 表面分析对主配位层和次配位层接触进行了研究。获得的 MD 数据预测,两种锇配合物在三种受体上的结合能存在显著差异。利用紫外可见光谱进行的体外 DNA 结合研究表明,1 和 2 都是通过插层方法与 DNA 结合的。利用密度泛函理论(DFT)方法计算了优化后的分子几何形状、前沿分子轨道(EHOMO 和 ELUMO)能量、全局亲电指数(ω)、化学硬度(η)、化学势(µ)和能带隙(EHOMO-ELUMO)。计算得出的结构参数(键长和角度)支持单晶 XRD 实验数据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Bioinorganic Chemistry and Applications
Bioinorganic Chemistry and Applications 化学-生化与分子生物学
CiteScore
7.00
自引率
5.30%
发文量
105
审稿时长
>12 weeks
期刊介绍: Bioinorganic Chemistry and Applications is primarily devoted to original research papers, but also publishes review articles, editorials, and letter to the editor in the general field of bioinorganic chemistry and its applications. Its scope includes all aspects of bioinorganic chemistry, including bioorganometallic chemistry and applied bioinorganic chemistry. The journal welcomes papers relating to metalloenzymes and model compounds, metal-based drugs, biomaterials, biocatalysis and bioelectronics, metals in biology and medicine, metals toxicology and metals in the environment, metal interactions with biomolecules and spectroscopic applications.
期刊最新文献
Biogenic Synthesis of Photosensitive Magnesium Oxide Nanoparticles Using Citron Waste Peel Extract and Evaluation of Their Antibacterial and Anticarcinogenic Potential. Molecular Structure, Spectroscopic, Frontier Molecular Orbital Analysis, Molecular Docking Studies, and In Vitro DNA-Binding Studies of Osmium(II)-Cymene Complexes with Aryl Phosphine and Aryl Phosphonium Assemblies New Tin (IV) and Organotin (IV) Complexes with a Hybrid Thiosemicarbazone/Hydrazone Ligand: Synthesis, Crystal Structure, and Antiproliferative Activity Synthesis and Characterization of Paclitaxel-Loaded Silver Nanoparticles: Evaluation of Cytotoxic Effects and Antimicrobial Activity Mitochondria-Targeting and Oxygen Self-Supplying Eccentric Hollow Nanoplatform for Enhanced Breast Cancer Photodynamic Therapy
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1