Hey ho, where'd the proton go? Final deprotonation of O6 within the S3 state of photosystem II

IF 3.9 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of photochemistry and photobiology. B, Biology Pub Date : 2024-05-29 DOI:10.1016/j.jphotobiol.2024.112946
Thomas Malcomson , Felix Rummel , Maxim Barchenko , Patrick O'Malley
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Abstract

The deprotonation of O6 within the S3 state marks the final deprotonation event before the formation of oxygen‑oxygen bond interactions and eventual production and release of dioxygen. Gaining a thorough understanding of this event, from the proton acceptors involved, to the exfiltration pathways available, is key in determining the nature of the resulting oxygen species, influencing the mechanism through which the first oxygen‑oxygen bond forms. Computational analysis, using BS-DFT methodologies, showed that proton abstraction by the local Glu189 residue provides consistent evidence against this being a viable mechanistic pathway due to the lack of a stable product structure. In contrast, abstraction via W3 shows an increasingly stable oxo-oxo product state between r[O5O6] = 2.1 Å & 1.9 Å. The resulting oxo-oxo state is stabilised through donation of β electron character from O6 to Mn1 and α electron character from O6 to O5. This donation from the O6 lone pair is shown to be a key factor in stabilising the oxo-oxo state, in addition to showing the initiation of first O5-O6 bond.

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质子去哪儿了?在光系统 II 的 S3 状态下,O6 最终去质子化
在 S3 状态下,O6 的去质子化是氧-氧键相互作用形成以及最终产生和释放二氧之前的最后一次去质子化过程。透彻了解这一过程,从所涉及的质子接受体到可用的渗出途径,是确定所产生的氧物种性质的关键,也是影响第一个氧-氧键形成机制的关键。利用 BS-DFT 方法进行的计算分析表明,由于缺乏稳定的产物结构,通过局部 Glu189 残基进行质子抽取的方法提供了一致的证据,证明这不是一条可行的机理途径。与此相反,通过 W3 抽取的质子在 r[O5O6] = 2.1 Å & 1.9 Å 之间显示出一种越来越稳定的氧氧化产物状态。这种来自 O6 孤对的电子捐献除了显示了第一个 O5-O6 键的形成外,还是稳定氧化-氧化态的关键因素。
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来源期刊
CiteScore
12.10
自引率
1.90%
发文量
161
审稿时长
37 days
期刊介绍: The Journal of Photochemistry and Photobiology B: Biology provides a forum for the publication of papers relating to the various aspects of photobiology, as well as a means for communication in this multidisciplinary field. The scope includes: - Bioluminescence - Chronobiology - DNA repair - Environmental photobiology - Nanotechnology in photobiology - Photocarcinogenesis - Photochemistry of biomolecules - Photodynamic therapy - Photomedicine - Photomorphogenesis - Photomovement - Photoreception - Photosensitization - Photosynthesis - Phototechnology - Spectroscopy of biological systems - UV and visible radiation effects and vision.
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