Resonance assignments of cytochrome MtoD from the extracellular electron uptake pathway of sideroxydans lithotrophicus ES-1

IF 0.8 4区 生物学 Q4 BIOPHYSICS Biomolecular NMR Assignments Pub Date : 2024-06-07 DOI:10.1007/s12104-024-10180-8
Anaísa Coelho, José M. Silva, Francesca Cantini, Mario Piccioli, Ricardo O. Louro, Catarina M. Paquete
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Abstract

The contribution of Fe(II)-oxidizing bacteria to iron cycling in freshwater, groundwater, and marine environments has been widely recognized in recent years. These organisms perform extracellular electron transfer (EET), which constitutes the foundations of bioelectrochemical systems for the production of biofuels and bioenergy. It was proposed that the Gram-negative bacterium Sideroxydans lithotrophicus ES-1 oxidizes soluble ferrous Fe(II) at the surface of the cell and performs EET through the Mto redox pathway. This pathway is composed by the periplasmic monoheme cytochrome MtoD that is proposed to bridge electron transfer between the cell exterior and the cytoplasm. This makes its functional and structural characterization, as well as evaluating the interaction process with its physiological partners, essential for understanding the mechanisms underlying EET. Here, we report the complete assignment of the heme proton and carbon signals together with a near-complete assignment of 1H, 13C and 15N backbone and side chain resonances for the reduced, diamagnetic form of the protein. These data pave the way to identify and structurally map the molecular interaction regions between the cytochrome MtoD and its physiological redox partners, to explore the EET processes of S. lithotrophicus ES-1.

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细胞色素 MtoD 的共振赋值来自于纤毛虫 ES-1 的细胞外电子摄取途径。
近年来,人们广泛认识到铁(II)氧化细菌对淡水、地下水和海洋环境中铁循环的贡献。这些生物可进行胞外电子转移(EET),是生产生物燃料和生物能源的生物电化学系统的基础。有人提出,革兰氏阴性细菌 Sideroxydans lithotrophicus ES-1 在细胞表面氧化可溶性亚铁 Fe(II),并通过 Mto 氧化还原途径进行 EET。该途径由细胞质周围的单血红素细胞色素 MtoD 构成,被认为是细胞外部和细胞质之间电子传递的桥梁。因此,对其进行功能和结构鉴定,以及评估其与生理伙伴的相互作用过程,对于了解 EET 的基本机制至关重要。在此,我们报告了血红素质子和碳信号的完整分配,以及该蛋白还原二磁形式的 1H、13C 和 15N 主干和侧链共振的近乎完整的分配。这些数据为确定细胞色素 MtoD 与其生理氧化还原伙伴之间的分子相互作用区域并绘制其结构图、探索 S. lithotrophicus ES-1 的 EET 过程铺平了道路。
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来源期刊
Biomolecular NMR Assignments
Biomolecular NMR Assignments 生物-光谱学
CiteScore
1.70
自引率
11.10%
发文量
59
审稿时长
6-12 weeks
期刊介绍: Biomolecular NMR Assignments provides a forum for publishing sequence-specific resonance assignments for proteins and nucleic acids as Assignment Notes. Chemical shifts for NMR-active nuclei in macromolecules contain detailed information on molecular conformation and properties. Publication of resonance assignments in Biomolecular NMR Assignments ensures that these data are deposited into a public database at BioMagResBank (BMRB; http://www.bmrb.wisc.edu/), where they are available to other researchers. Coverage includes proteins and nucleic acids; Assignment Notes are processed for rapid online publication and are published in biannual online editions in June and December.
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