A python package implementing Direct Reconstruction Technique (DIRECT) for dendroclimatological studies

IF 2.7 3区 农林科学 Q1 FORESTRY Dendrochronologia Pub Date : 2024-05-28 DOI:10.1016/j.dendro.2024.126217
Grigoriy Lozhkin , Ekaterina Dolgova , Vladimir Matskovsky
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Abstract

The DIrect REConstruction Technique (DIRECT) is a dendroclimatological method that constructs a climatic response surface to account for changes of climatic response with tree age. This surface is then used as a transfer function for climatic reconstructions. Unlike widely-used standardization methods such as the traditional curve-fitting approach, the regional curve standardization, and their signal-free modifications that perform detrending explicitly, DIRECT accounts for age-size related trend in tree-ring measurements by construction of the response surface dependent on two variables: tree-ring parameter (width, blue intensity etc.) and cambial age. The method is capable of taking into account nonlinear climatic response of trees and differing response of younger and older trees. Here we describe an application of the newly developed open-source Python package that implements DIRECT (https://github.com/Gr1Lo/direct) to one real and one theoretical dataset. The package consists of functions for reading the initial data, constructing a response surface, and for reconstructing climate variables via this surface. The functions for visual assessment of the initial data and for the estimation and selection of parameters for constructing the response surface are also presented. Also here we provide a comparison of the DIRECT method with traditional standardization-reconstruction routines.

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用于树状气候学研究的直接重建技术(DIRECT)python 软件包
正确的气候重建技术(DIRECT)是一种树木气候学方法,它构建了一个气候响应面,以考虑气候响应随树龄的变化。该表面随后被用作气候重建的转移函数。与广泛使用的标准化方法(如传统的曲线拟合法、区域曲线标准化法及其明确执行去趋势的无信号修改法)不同,DIRECT 通过构建依赖于两个变量(树环参数(宽度、蓝色强度等)和韧皮部年龄)的响应面来考虑树环测量中与年龄大小相关的趋势。该方法能够考虑到树木对气候的非线性反应以及幼树和老树的不同反应。在此,我们将介绍新开发的开源 Python 软件包在一个实际数据集和一个理论数据集上的应用,该软件包实现了 DIRECT (https://github.com/Gr1Lo/direct)。该软件包由读取初始数据、构建响应曲面以及通过该曲面重建气候变量的函数组成。此外,还介绍了对初始数据进行可视化评估以及估算和选择用于构建响应面的参数的函数。此外,我们还将 DIRECT 方法与传统的标准化-重建程序进行了比较。
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来源期刊
Dendrochronologia
Dendrochronologia FORESTRY-GEOGRAPHY, PHYSICAL
CiteScore
5.50
自引率
13.30%
发文量
82
审稿时长
22.8 weeks
期刊介绍: Dendrochronologia is a peer-reviewed international scholarly journal that presents high-quality research related to growth rings of woody plants, i.e., trees and shrubs, and the application of tree-ring studies. The areas covered by the journal include, but are not limited to: Archaeology Botany Climatology Ecology Forestry Geology Hydrology Original research articles, reviews, communications, technical notes and personal notes are considered for publication.
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