Fine-Scale Spatial Prediction on the Risk of Plasmodium vivax Infection in the Republic of Korea.

IF 3 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Journal of Korean Medical Science Pub Date : 2024-06-10 DOI:10.3346/jkms.2024.39.e176
Kyung-Duk Min, Yae Jee Baek, Kyungwon Hwang, Na-Ri Shin, So-Dam Lee, Hyesu Kan, Joon-Sup Yeom
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Abstract

Background: Malaria elimination strategies in the Republic of Korea (ROK) have decreased malaria incidence but face challenges due to delayed case detection and response. To improve this, machine learning models for predicting malaria, focusing on high-risk areas, have been developed.

Methods: The study targeted the northern region of ROK, near the demilitarized zone, using a 1-km grid to identify areas for prediction. Grid cells without residential buildings were excluded, leaving 8,425 cells. The prediction was based on whether at least one malaria case was reported in each grid cell per month, using spatial data of patient locations. Four algorithms were used: gradient boosted (GBM), generalized linear (GLM), extreme gradient boosted (XGB), and ensemble models, incorporating environmental, sociodemographic, and meteorological data as predictors. The models were trained with data from May to October (2019-2021) and tested with data from May to October 2022. Model performance was evaluated using the area under the receiver operating characteristic curve (AUROC).

Results: The AUROC of the prediction models performed excellently (GBM = 0.9243, GLM = 0.9060, XGB = 0.9180, and ensemble model = 0.9301). Previous malaria risk, population size, and meteorological factors influenced the model most in GBM and XGB.

Conclusion: Machine-learning models with properly preprocessed malaria case data can provide reliable predictions. Additional predictors, such as mosquito density, should be included in future studies to improve the performance of models.

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关于大韩民国间日疟原虫感染风险的精细空间预测。
背景:大韩民国(ROK)的消除疟疾战略降低了疟疾发病率,但由于病例检测和响应延迟而面临挑战。为了改善这一状况,韩国开发了用于预测疟疾的机器学习模型,重点关注高风险地区:研究以非军事区附近的韩国北部地区为目标,使用 1 公里网格来确定预测区域。没有居民楼的网格单元被排除在外,剩下 8425 个单元。预测的依据是每个网格单元每月是否至少报告一例疟疾病例,使用的是患者位置的空间数据。使用了四种算法:梯度提升(GBM)、广义线性(GLM)、极端梯度提升(XGB)和集合模型,将环境、社会人口和气象数据作为预测因子。这些模型使用 2019-2021 年 5 月至 10 月的数据进行训练,并使用 2022 年 5 月至 10 月的数据进行测试。使用接收者工作特征曲线下面积(AUROC)对模型性能进行评估:预测模型的 AUROC 表现优异(GBM = 0.9243、GLM = 0.9060、XGB = 0.9180 和集合模型 = 0.9301)。以前的疟疾风险、人口数量和气象因素对 GBM 和 XGB 模型的影响最大:结论:经过适当预处理的疟疾病例数据的机器学习模型可以提供可靠的预测。在未来的研究中应加入更多的预测因素,如蚊子密度,以提高模型的性能。
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来源期刊
Journal of Korean Medical Science
Journal of Korean Medical Science 医学-医学:内科
CiteScore
7.80
自引率
8.90%
发文量
320
审稿时长
3-6 weeks
期刊介绍: The Journal of Korean Medical Science (JKMS) is an international, peer-reviewed Open Access journal of medicine published weekly in English. The Journal’s publisher is the Korean Academy of Medical Sciences (KAMS), Korean Medical Association (KMA). JKMS aims to publish evidence-based, scientific research articles from various disciplines of the medical sciences. The Journal welcomes articles of general interest to medical researchers especially when they contain original information. Articles on the clinical evaluation of drugs and other therapies, epidemiologic studies of the general population, studies on pathogenic organisms and toxic materials, and the toxicities and adverse effects of therapeutics are welcome.
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