In silico drug discovery: a machine learning-driven systematic review

IF 2.6 4区 医学 Q3 CHEMISTRY, MEDICINAL Medicinal Chemistry Research Pub Date : 2024-06-15 DOI:10.1007/s00044-024-03260-w
Sema Atasever
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Abstract

This systematic review, which was carried out between 2018 and 2022 in accordance with PRISMA principles, assesses how machine learning (ML) and other computational approaches are integrated into drug discovery, with a focus on virtual screening (VS). The main goals are to evaluate the state of in silico drug-target interaction prediction techniques, gather useful computational tools, and provide model building help. The study emphasizes the significance of ML, molecular docking, bioinformatics, and cheminformatics in improving drug development efficiency by assessing 201 papers, of which 119 met inclusion criteria. It serves as a methodological guide for researchers, emphasizing on the effective use of computational approaches and decision-making improvements. This study relates computational techniques to drug development, discusses present constraints, and recommends future research topics with the goal of accelerating and improving therapeutic agent discovery. In summary, this systematic review highlighted numerous major tools, databases, and techniques that are critical in computational drug discovery, including the ChEMBL Database, Random Forest (RF) Algorithm, Extended Connectivity Fingerprints (ECFP), and RDKit. These tools and techniques highlight the transforming power of computational methods in pharmaceutical development. They offer researchers the ability to develop new computational models and improve drug development processes, thereby enabling the rapid advancement for new therapeutic agents via robust platforms.

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硅学药物发现:机器学习驱动的系统综述
本系统综述于 2018 年至 2022 年期间按照 PRISMA 原则进行,评估了机器学习(ML)和其他计算方法如何整合到药物发现中,重点关注虚拟筛选(VS)。主要目标是评估药物-靶点相互作用硅学预测技术的现状,收集有用的计算工具,并提供模型构建帮助。本研究通过评估 201 篇论文(其中 119 篇符合纳入标准),强调了 ML、分子对接、生物信息学和化学信息学在提高药物开发效率方面的重要意义。它为研究人员提供了方法论指导,强调了计算方法的有效使用和决策改进。本研究将计算技术与药物开发联系起来,讨论了目前的限制因素,并推荐了未来的研究课题,目的是加速和改进治疗药物的发现。总之,本系统综述强调了对计算药物发现至关重要的众多主要工具、数据库和技术,包括 ChEMBL 数据库、随机森林(RF)算法、扩展连接性指纹(ECFP)和 RDKit。这些工具和技术彰显了计算方法在药物开发中的变革力量。它们为研究人员提供了开发新计算模型和改进药物开发流程的能力,从而使他们能够通过强大的平台快速开发出新的治疗药物。
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来源期刊
Medicinal Chemistry Research
Medicinal Chemistry Research 医学-医药化学
CiteScore
4.70
自引率
3.80%
发文量
162
审稿时长
5.0 months
期刊介绍: Medicinal Chemistry Research (MCRE) publishes papers on a wide range of topics, favoring research with significant, new, and up-to-date information. Although the journal has a demanding peer review process, MCRE still boasts rapid publication, due in part, to the length of the submissions. The journal publishes significant research on various topics, many of which emphasize the structure-activity relationships of molecular biology.
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