Revealing the key role of cuproptosis in osteoporosis via the bioinformatic analysis and experimental validation of cuproptosis-related genes.

IF 2.7 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Mammalian Genome Pub Date : 2024-09-01 Epub Date: 2024-06-21 DOI:10.1007/s00335-024-10049-0
Jianxing Chen, Qifeng Sun, Yi Wang, Wenzhe Yin
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Abstract

The incidence of osteoporosis has rapidly increased owing to the ageing population. Cuproptosis, a novel mechanism that regulates cell death, may be a new therapeutic approach. However, the relevance of cuproptosis in the immune microenvironment and osteoporosis immunotherapy is still unknown. We intersected the differentially expressed genes from osteoporotic samples with 75 cuproptosis-related genes to identify 16 significantly expressed cuproptosis genes. We further explored the connection between the cuproptosis pattern, immune microenvironment, and immunotherapy. The weighted gene co-expression network analysis algorithm was used to identify cuproptosis phenotype-associated genes, and we used quantitative real-time PCR and immunohistochemistry in mouse femur tissues to verify hub gene (MAP2K2, FDX1, COX19, VEGFA, CDKN2A, and NFE2L2) expression. Six hub genes and 59 cuproptosis phenotype-associated genes involved in immunisation were identified among the osteoporosis and control groups, and the majority of these 59 genes were enriched in the inflammatory response, as well as in signal transducers, Janus kinase, and transcription pathway activators. In addition, two different clusters of cuproptosis were found, and immune infiltration analysis showed that gene Cluster 1 had a greater immune score and immune infiltration level. Further analysis revealed that three key genes (COX19, MAP2K2, and FDX1) were highly correlated with immune cell infiltration, and external experiments validated the association of these three genes with the prognosis of osteoporosis. We used the three key mRNAs COX19, MAP2K2, and FDX1 as a classification model that may systematically elucidate the complex connection between cuproptosis and the immune microenvironment of osteoporosis. New insights into osteoporosis pathogenesis and immunotherapy prospects may be gained from this study.

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通过对杯突症相关基因的生物信息学分析和实验验证,揭示杯突症在骨质疏松症中的关键作用。
由于人口老龄化,骨质疏松症的发病率迅速上升。杯突症是一种调节细胞死亡的新机制,可能是一种新的治疗方法。然而,杯突在免疫微环境和骨质疏松症免疫疗法中的相关性仍然未知。我们将骨质疏松症样本中差异表达的基因与 75 个杯突症相关基因进行交叉分析,发现了 16 个显著表达的杯突症基因。我们进一步探讨了杯突症模式、免疫微环境和免疫疗法之间的联系。我们利用加权基因共表达网络分析算法确定了杯突症表型相关基因,并在小鼠股骨组织中使用定量实时 PCR 和免疫组化方法验证了枢纽基因(MAP2K2、FDX1、COX19、VEGFA、CDKN2A 和 NFE2L2)的表达。在骨质疏松症组和对照组中发现了6个枢纽基因和59个参与免疫的杯突症表型相关基因,这59个基因中的大多数都富集在炎症反应以及信号转导子、Janus激酶和转录通路激活子中。此外,还发现了两个不同的杯突症集群,免疫浸润分析表明,基因集群1的免疫得分和免疫浸润水平更高。进一步分析发现,三个关键基因(COX19、MAP2K2 和 FDX1)与免疫细胞浸润高度相关,外部实验验证了这三个基因与骨质疏松症预后的关联。我们将 COX19、MAP2K2 和 FDX1 这三个关键 mRNA 作为一个分类模型,可以系统地阐明杯状突变与骨质疏松症免疫微环境之间的复杂联系。这项研究可能会为骨质疏松症的发病机制和免疫疗法前景提供新的见解。
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来源期刊
Mammalian Genome
Mammalian Genome 生物-生化与分子生物学
CiteScore
4.00
自引率
0.00%
发文量
33
审稿时长
6-12 weeks
期刊介绍: Mammalian Genome focuses on the experimental, theoretical and technical aspects of genetics, genomics, epigenetics and systems biology in mouse, human and other mammalian species, with an emphasis on the relationship between genotype and phenotype, elucidation of biological and disease pathways as well as experimental aspects of interventions, therapeutics, and precision medicine. The journal aims to publish high quality original papers that present novel findings in all areas of mammalian genetic research as well as review articles on areas of topical interest. The journal will also feature commentaries and editorials to inform readers of breakthrough discoveries as well as issues of research standards, policies and ethics.
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