Non-destructive wood identification using X-ray µCT scanning: which resolution do we need?

IF 4.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Plant Methods Pub Date : 2024-06-24 DOI:10.1186/s13007-024-01216-0
Sofie Dierickx, Siska Genbrugge, Hans Beeckman, Wannes Hubau, Pierre Kibleur, Jan Van den Bulcke
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Abstract

Background: Taxonomic identification of wood specimens provides vital information for a wide variety of academic (e.g. paleoecology, cultural heritage studies) and commercial (e.g. wood trade) purposes. It is generally accomplished through the observation of key anatomical features. Classic methodologies mostly require destructive sub-sampling, which is not always acceptable. X-ray computed micro-tomography (µCT) is a promising non-destructive alternative since it allows a detailed non-invasive visualization of the internal wood structure. There is, however, no standardized approach that determines the required resolution for proper wood identification using X-ray µCT. Here we compared X-ray µCT scans of 17 African wood species at four resolutions (1 µm, 3 µm, 8 µm and 15 µm). The species were selected from the Xylarium of the Royal Museum for Central Africa, Belgium, and represent a wide variety of wood-anatomical features.

Results: For each resolution, we determined which standardized anatomical features can be distinguished or measured, using the anatomical descriptions and microscopic photographs on the Inside Wood Online Database as a reference. We show that small-scale features (e.g. pits and fibres) can be best distinguished at high resolution (especially 1 µm voxel size). In contrast, large-scale features (e.g. vessel porosity or arrangement) can be best observed at low resolution due to a larger field of view. Intermediate resolutions are optimal (especially 3 µm voxel size), allowing recognition of most small- and large-scale features. While the potential for wood identification is thus highest at 3 µm, the scans at 1 µm and 8 µm were successful in more than half of the studied cases, and even the 15 µm resolution showed a high potential for 40% of the samples.

Conclusions: The results show the potential of X-ray µCT for non-destructive wood identification. Each of the four studied resolutions proved to contain information on the anatomical features and has the potential to lead to an identification. The dataset of 17 scanned species is made available online and serves as the first step towards a reference database of scanned wood species, facilitating and encouraging more systematic use of X-ray µCT for the identification of wood species.

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利用 X 射线 µCT 扫描进行无损木材鉴定:我们需要哪种分辨率?
背景:木材标本的分类鉴定为各种学术(如古生态学、文化遗产研究)和商业(如木材贸易)目的提供了重要信息。通常是通过观察关键的解剖特征来实现的。传统的方法大多需要进行破坏性的子取样,这并不总是可以接受的。X 射线计算机微断层扫描(µCT)是一种很有前途的非破坏性替代方法,因为它可以对木材内部结构进行详细的非侵入式观察。然而,目前还没有标准化的方法来确定使用 X 射线 µCT 正确识别木材所需的分辨率。在这里,我们比较了 17 种非洲木材在四种分辨率(1 微米、3 微米、8 微米和 15 微米)下的 X 射线 µCT 扫描结果。这些物种选自比利时中部非洲皇家博物馆的Xylarium,代表了各种木材解剖学特征:结果:我们以 Inside Wood 在线数据库中的解剖描述和显微照片为参考,确定了每种分辨率下可区分或测量的标准化解剖特征。我们发现,在高分辨率下(尤其是 1 微米体素尺寸),小尺度特征(如凹坑和纤维)最容易分辨。相反,大尺度特征(如血管孔隙度或排列)在低分辨率下观察效果最佳,因为视场更大。中等分辨率是最佳选择(尤其是 3 微米体素尺寸),可以识别大多数小型和大型特征。因此,3 微米分辨率下的木材识别潜力最大,而 1 微米和 8 微米分辨率下的扫描在一半以上的研究案例中都取得了成功,甚至 15 微米分辨率下也有 40% 的样品显示出了很高的识别潜力:结论:研究结果表明 X 射线 µCT 在无损木材鉴定方面的潜力。事实证明,所研究的四种分辨率中的每一种都包含解剖特征信息,并有可能导致鉴定。17 个扫描物种的数据集可在线查阅,是建立扫描木材物种参考数据库的第一步,有助于并鼓励更系统地使用 X 射线 µCT 鉴定木材物种。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Plant Methods
Plant Methods 生物-植物科学
CiteScore
9.20
自引率
3.90%
发文量
121
审稿时长
2 months
期刊介绍: Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences. There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics. Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.
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