Identification of four TTN variants in three families with fetal akinesia deformation sequence.

IF 2.1 4区 医学 Q3 GENETICS & HEREDITY BMC Medical Genomics Pub Date : 2024-06-27 DOI:10.1186/s12920-024-01946-z
Lihong Fan, Haibo Li, Ying Xu, Yingzhi Huang, Yeqing Qian, Pengzhen Jin, Xueping Shen, Zhi Li, Mingsong Liu, Yufei Liang, Guosong Shen, Minyue Dong
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Abstract

Background: TTN is a complex gene with large genomic size and highly repetitive structure. Pathogenic variants in TTN have been reported to cause a range of skeletal muscle and cardiac disorders. Homozygous or compound heterozygous mutations tend to cause a wide spectrum of phenotypes with congenital or childhood onset. The onset and severity of the features were considered to be correlated with the types and location of the TTN variants.

Methods: Whole-exome sequencing was performed on three unrelated families presenting with fetal akinesia deformation sequence (FADS), mainly characterized by reduced fetal movements and limb contractures. Sanger sequencing was performed to confirm the variants. RT-PCR analysis was performed.

Results: TTN c.38,876-2 A > C, a meta transcript-only variant, with a second pathogenic or likely pathogenic variant in trans, was observed in five affected fetuses from the three families. Sanger sequencing showed that all the fetal variants were inherited from the parents. RT-PCR analysis showed two kinds of abnormal splicing, including intron 199 extension and skipping of 8 bases.

Conclusions: Here we report on three unrelated families presenting with FADS caused by four TTN variants. In addition, our study demonstrates that pathogenic meta transcript-only TTN variant can lead to defects which is recognizable prenatally in a recessive manner.

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在三个患有胎儿肌动畸形序列的家族中鉴定出四种 TTN 变体。
背景TTN 是一个复杂的基因,具有较大的基因组规模和高度重复的结构。据报道,TTN 的致病变异可导致一系列骨骼肌和心脏疾病。同卵或复合杂合突变往往会导致先天性或儿童期发病的多种表型。这些特征的发病和严重程度被认为与 TTN 变异的类型和位置有关:方法:对三个不相关的胎儿运动障碍畸形序列(FADS)家族进行了全基因组测序,其主要特征是胎动减少和肢体挛缩。为了确认变异,还进行了桑格测序。进行了 RT-PCR 分析:结果:在三个家族的五个受影响胎儿中观察到了TTN c.38,876-2 A > C,这是一个仅有元转录本的变异,反式中存在第二个致病或可能致病的变异。桑格测序显示,所有胎儿变异均遗传自父母。RT-PCR 分析显示了两种异常剪接,包括内含子 199 延伸和跳过 8 个碱基:结论:我们在此报告了由四个 TTN 变体引起的三个无血缘关系的 FADS 家族。此外,我们的研究还表明,致病性纯元转录本 TTN 变异可导致缺陷,这种缺陷可在产前以隐性方式识别。
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来源期刊
BMC Medical Genomics
BMC Medical Genomics 医学-遗传学
CiteScore
3.90
自引率
0.00%
发文量
243
审稿时长
3.5 months
期刊介绍: BMC Medical Genomics is an open access journal publishing original peer-reviewed research articles in all aspects of functional genomics, genome structure, genome-scale population genetics, epigenomics, proteomics, systems analysis, and pharmacogenomics in relation to human health and disease.
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