25 years of the IPD-IMGT/HLA Database

IF 5.9 4区 医学 Q2 CELL BIOLOGY HLA Pub Date : 2024-06-27 DOI:10.1111/tan.15549
James Robinson, Dominic J. Barker, Steven G. E. Marsh
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Abstract

Twenty-five years ago, in 1998, the HLA Informatics Group of the Anthony Nolan Research Institute released the IMGT/HLA Database. Since this time, this online resource has acted as the repository for the numerous variant sequences of HLA alleles named by the WHO Nomenclature Committee for Factors of the HLA System. The IPD-IMGT/HLA Database has provided a stable, highly accessible, user-friendly repository for this work. During this time, the technology underlying HLA typing has undergone significant changes. Next generation sequencing (NGS) has superseded previous methodologies of HLA typing and can generate large amounts of high-resolution sequencing data. This has resulted in a drastic increase in the number and complexity of sequences submitted to the database. The challenge for the IPD-IMGT/HLA Database has been to maintain the highest standards of curation, while supporting the core set of tools and functionality to our users with increased numbers of submissions and sequences. Traditional methods of accessing and presenting data have been challenged and new methods utilising new computing technologies have had to be developed to keep pace and support a shifting user demographic.

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IPD-IMGT/HLA 数据库 25 周年。
25 年前,即 1998 年,安东尼诺兰研究所的 HLA 信息小组发布了 IMGT/HLA 数据库。从那时起,这一在线资源就成为世界卫生组织 HLA 系统因子命名委员会命名的众多 HLA 等位基因变异序列的储存库。IPD-IMGT/HLA 数据库为这项工作提供了一个稳定、高度可访问、用户友好的资源库。在此期间,HLA 分型的基础技术发生了重大变化。新一代测序技术(NGS)已经取代了以前的 HLA 分型方法,可以生成大量的高分辨率测序数据。这导致提交给数据库的序列数量和复杂性急剧增加。IPD-IMGT/HLA 数据库面临的挑战是如何保持最高标准的管理,同时在提交数据和序列数量增加的情况下为用户提供核心工具和功能支持。访问和展示数据的传统方法受到了挑战,必须利用新的计算技术开发新的方法,以跟上并支持不断变化的用户群。
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来源期刊
HLA
HLA Immunology and Microbiology-Immunology
CiteScore
3.00
自引率
28.80%
发文量
368
期刊介绍: HLA, the journal, publishes articles on various aspects of immunogenetics. These include the immunogenetics of cell surface antigens, the ontogeny and phylogeny of the immune system, the immunogenetics of cell interactions, the functional aspects of cell surface molecules and their natural ligands, and the role of tissue antigens in immune reactions. Additionally, the journal covers experimental and clinical transplantation, the relationships between normal tissue antigens and tumor-associated antigens, the genetic control of immune response and disease susceptibility, and the biochemistry and molecular biology of alloantigens and leukocyte differentiation. Manuscripts on molecules expressed on lymphoid cells, myeloid cells, platelets, and non-lineage-restricted antigens are welcomed. Lastly, the journal focuses on the immunogenetics of histocompatibility antigens in both humans and experimental animals, including their tissue distribution, regulation, and expression in normal and malignant cells, as well as the use of antigens as markers for disease.
期刊最新文献
Characterisation of the HLA-DQ alpha eplet 52SK targeting the DQA1*01 alleles family. Characterisation of the novel HLA-C*01:262 allele by sequencing-based typing. Detection of the HLA-B*40:78 allele in a Taiwanese individual. Identification of three new HLA-A intronic variants by next-generation sequencing. Analysis of KIR and HLA Polymorphism in Chinese Individuals With COVID-19.
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